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Institute of Molecular Pathology and Immunology (J.L., V.T., P.S., V.M., J.M., A.A., M.S.-S.) and Medical Faculty (J.L., V.T., P.S., M.S.-S.), University of Porto, 4200-465 Porto, Portugal; Department of Pathology (J.M., M.S.-S.), Hospital S. João, 4200 Porto, Portugal; Centro di Endocrinologia ed Oncologia Sperimentale del Consiglio Nazionale delle Ricerche, Dipartimento di Biologia e Patologia Cellulare e Molecolare (G.S., M.S.), Università di Napoli Federico II, 80137 Italia; Institute of Endocrinology and Metabolism (T.B., M.T.), 254114 Kiev, Ukraine; Medical Radiological Research Centre of Russian Academy of Medical Sciences (A.A.), 249020 Obninsk, Russian Federation; South West Wales Cancer Institute (S.J., G.T.), Swansea Clinical School, Singleton Hospital, SA2 8QA Swansea, United Kingdom; and Strangeways Research Laboratory (D.W.), University of Cambridge, CB1 8RN Cambridge, United Kingdom
Address all correspondence and requests for reprints to: Dr. Manuel Sobrinho-Simões, Institute of Molecular Pathology and Immunology, University of Porto, Rua Dr. Roberto Frias s/n, 4200-465 Porto, Portugal. E-mail: ssimoes{at}ipatimup.pt.
| Abstract |
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| Introduction |
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Recently, mutations in BRAF were found in various types of sporadic human cancers, including melanomas, thyroid cancer, colon cancer, lung cancer, and ovarian cancer (7, 8, 9, 10, 11, 12, 13, 14, 15), as well as benign nevi lesions (16). BRAF belongs to the RAF family of kinases, which includes two other isoforms: ARAF and CRAF (RAF-1). BRAF has a serine/threonine kinase activity and is located downstream of RAS and upstream of MEK in the classic MAPK cascade (17, 18, 19). Screening studies revealed a hotspot at position 1799, resulting in a substitution of a valine for a glutamate at residue 600 [previously position 1796 and residue 599, but according to recent data sequence, numbering of codons and nucleotides after exon 1 of BRAF were changed by +1 and +3, respectively (20)]. This mutation is located in the activating segment of BRAF and represents the vast majority of tumor-associated BRAF mutations (12). Functional studies led to the conclusion that this mutation resulted in a 70-to 138-fold increase of the activity of BRAF, independently of RAS stimulation, predicted to result in a proliferation stimulus to the cells and, ultimately, in cancer (12). Our group has shown that 46% (23 of 50) of sporadic adult PTCs harbored the BRAF V600E mutation (14) and, more recently, that BRAF V600E mutation appeared to be restricted to PTCs displaying a papillary or a mixed papillary/follicular growth pattern (21). The frequency of BRAF mutations in sporadic adult PTC is the second highest reported in human cancer, after melanoma (12, 16). These results fit with those published by other groups who found the V600E mutation in frequencies varying from 2969% of PTCs (13, 15, 22, 23, 24, 25). In the series of sporadic PTCs we have previously published (14), RET/PTC rearrangements were present in 18% of cases and did not coexist with BRAF V600E mutation in any case. A similar finding was reported by Kimura et al. (13), who detected RET/PTC rearrangements in 16% of their cases. The same holds true regarding RAS mutations that did not coexist with BRAF mutations in our series nor in that of Kimura et al. (13, 14).
The results we and other groups obtained in sporadic thyroid cancer support the claim that BRAF mutations are a major event in sporadic thyroid papillary carcinogenesis (13, 14, 15, 21, 22, 23, 24, 25). However, to date, only one study has analyzed specifically radiation-induced PTC that occurred as a consequence of the Chernobyl accident. In this study, the authors found a similar frequency of BRAF mutations in these radiation-induced PTCs (three of 10, 30%) when compared with sporadic PTCs (2969%), even though a lower frequency (one of five, 20%) was found when analyzing only radiation-induced PTCs in children (26). We undertook the present study to determine the frequency of such mutations in a series of post-Chernobyl childhood thyroid tumors, to find out whether or not the inverse relationship between BRAF mutations and RET/PTC rearrangements observed in sporadic thyroid tumors is also present in cases occurring in a radiation setting and to increase our understanding of the mechanisms involved in radiation carcinogenesis.
| Patients and Methods |
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The diagnosis of all the Chernobyl cases was confirmed by the members of the Pathology Panel of the Chernobyl Tumor Bank. The diagnosis of the nonexposed cases and the subclassification of all the cases were carried out by at least two of four experienced thyroid pathologists among the authors (T.B., J.M., D.W., and M.S.-S.).
BRAF mutation analysis
To screen for BRAF mutations, we analyzed DNA from tumor tissue and, when available, adjacent thyroid tissue and peripheral blood of the patients. We studied the two regions of BRAF where mutations have been identified, G loop region and activation segment, which are encoded by exons 11 and 15, respectively. Both exons were amplified by PCR using conditions described elsewhere (12). The amplicons were then subjected to single strand conformation polymorphism (SSCP) analysis: PCR products of BRAF exons 11 and 15 were diluted 1:1 with loading buffer (95% formamide, 0.05% bromophenol blue, and 0.05% xylene cyanol), denatured at 98 C for 10 min, and cooled on ice for 5 min. Electrophoresis of the denatured PCR products was carried out in nondenaturing 0.8x mutation detection enhancement gels (BMA, Rockland, ME) at 180 V and 8 C for 15 h. PCR/SSCP products were visualized by standard DNA silver staining.
BRAF sequencing analysis
Whenever a sample presented aberrant bands in the SSCP analysis, these bands were excised from the mutation detection enhancement gel, and the PCR products were eluted and used as template for a second PCR using the aforementioned PCR conditions. PCR products from this second PCR were subjected to a purifying treatment using Exonuclease I (New England Biolabs, Beverly, MA) and Shrimp Alkaline Phosphatase (Amersham Biosciences, Piscataway, NJ) and subjected to automatic sequencing, using ABI Prism dGTP BigDye Terminator Ready Reaction Kit (Perkin-Elmer, Foster City, CA) and an ABI prism 3100 Genetic Analyzer (Perkin-Elmer). Sequencing was performed on both strands using the aforementioned primers. Whenever an alteration was identified by sequencing, the DNA sample was subjected to a second mutation analysis, including PCR amplification from genomic DNA of the exon containing the alteration, SSCP analysis, and sequencing of the amplified fragment, to confirm the existence of the alteration.
In both SSCP and sequencing analysis, we used the TPC-1 cell line as a negative control for BRAF mutations and the HT-29 cell line as a positive control for BRAF V600E mutation.
Expression of RET/PTC1 and RET/PTC3
The prevalence of RET/PTC1 and RET/PTC3 rearrangements were analyzed by using the RT-PCR assay. A common antisense and different forward oligodeoxynucleotides, specific for the H4 and RFG genes, were used as before (6). The sequence of the forward primers used were: RET/PTC1, 5'-ATTGTCATCTCGCCGTTC-3' (nucleotides 196214 of RET/PTC1); and RET/PTC3, 5'-AAGCAAACCTGCCAGTGG-3' (nucleotides 697714 of RET/PTC3). The sequence of the reverse primer was: 5'-TGCTTCAGGACGTTGAAC-3' (nucleotides 543561 of RET/PTC1). One microgram of RNA was reverse transcribed and subsequently subjected to 35 cycles of PCR with a thermal cycler (Perkin-Elmer-Cetus). The product of the reaction was analyzed on a 2% agarose gel and hybridized with a RET probe covering the TK domain. The quality of the RNA samples was assayed by amplifying the HPRT mRNA. The HPRT specific primers were: forward primer, 5'-CCTGCTGGATTACATCAAAGCACTG-3', corresponding to nucleotides 316340 of the third exon of the human gene; and reverse primer, 5'-CCTGAAGTATTCATTATAGTCTCAAGG-3', corresponding to nucleotides 685661 of the eighth exon of the human gene.
Statistical analysis
The statistical analysis of the results was performed using the
2 test with the Yates correction and Fishers exact test. A P value < 0.05 was considered statistically significant.
Informed consent
Informed consent was obtained in accordance with National Institutes of Health guidelines for all the tissues from the Chernobyl-related tumors. The use of spare sections from the paraffin blocks of the sporadic tumors was in accordance with the guidelines of the ethical committee of the University Hospital of S. João (Porto, Portugal).
| Results |
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Three of the four post-Chernobyl cases presenting the V600E mutation were conventional forms of PTC with a predominantly papillary growth pattern, and the remaining case was a follicular variant of PTC (Table 2
). No solid variant of PTC displayed the BRAF V600E mutation, in contrast to the occurrence of RET/PTC rearrangements in four of the eight cases of this variant (Table 2
).
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Among the five cases who were oldest at time of exposure, three showed a BRAF mutation, whereas only one showed a RET/PTC rearrangement. Patients with RET/PTC rearrangements had the lowest mean age at exposure of any group (Table 3
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No mutations in exon 11 of BRAF were found in any of 45 post-Chernobyl tumors (Table 1
).
| Discussion |
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It is well known that sporadic PTCs are commonly associated with rearrangements of the RET protooncogene (360%) (29). In the post-Chernobyl irradiation setting, this association is even more evident; 5776% of cases have been reported to show RET/PTC rearrangements, with RET/PTC3 and RET/PTC1 being the most prevalent (1, 2). RET/PTC3 was found in an unusually high frequency in the earlier tumors and was associated with a solid pattern of growth and clinical aggressiveness (1). It is still unclear whether this apparent high frequency of RET/PTC rearrangements is related to radiation or to age; a similar frequency of RET/PTC rearrangement was found in unexposed children with papillary carcinoma in England and Wales (30). Nevertheless, there is still a high percentage of post-Chernobyl PTCs with no genetic alterations yet disclosed.
After the discovery of BRAF mutations as a major event in sporadic PTC (13, 14, 15), we were interested both to assess the prevalence of BRAF mutations in a cohort of post-Chernobyl tumors and sporadic childhood PTCs and to ascertain whether BRAF mutations and RET/PTC rearrangements were mutually exclusive. Our results revealed a significantly lower percentage of BRAF mutations in post-Chernobyl PTC (12%) than in our own series of sporadic adult PTC studied with the same techniques (46%) (P = 0.0009) (14), whereas the opposite occurs (as one would expect) regarding the prevalence of RET/PTC rearrangement (14). The frequency of BRAF mutations in sporadic adult PTC in our series (14) is similar to most of those reported in other studies (Table 4
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However, there are other interrelated possibilities that must be considered. The earlier BRAF studies have been carried out in adult patients, whereas our Chernobyl-related studies have included only children and adolescents. To investigate possible age-related effects, we have compared the results in post-Chernobyl PTC with the findings in 17 sporadic PTCs that occurred in children under 18 yr. In this setting, we observed that only one PTC of 17 (6%) harbored the BRAF V600E mutation. This frequency is similar to that observed in post-Chernobyl PTC but significantly lower than that of sporadic PTC occurring in adults (P = 0.0016) (14).
Our findings revealed that BRAF mutations are usually rare in sporadic childhood thyroid carcinoma, both in an irradiation setting and in sporadic tumors. Therefore, it is possible that the route to thyroid carcinogenesis that involves a BRAF mutation may have a longer latent period than the route involving a rearrangement. This explanation can only be tested by waiting another few years and then reassessing the frequency of BRAF mutations and RET/PTC rearrangements in adult Chernobyl-related thyroid carcinomas and in the more readily available age-matched adult patients.
In addition, our study has confirmed codon 600 (nucleotide 1799) as a mutational hotspot in BRAF coding sequence and the V600E mutation as specific to PTC. As has been observed in other studies (13, 14, 24), no mutation was found in BRAF exon 11 in PTC, nor in FA. Interestingly, we observed in one FA a mutation in codon 601 (K601E); an identical mutation had been previously detected in one sporadic FA (14) as well as in 9% of cases of follicular variant of PTC (21). Further studies are needed to assess the frequency and the putative clinical significance of this mutation in both benign and malignant thyroid tumors.
Our findings show that BRAF mutations are much less common in PTC in children and adolescents, both sporadic and radiation related, than in any of the reported series of sporadic PTC. They emphasize the importance of taking age into account when comparing mutation frequency in different series. Continuing study of the Chernobyl-related tumors and of the relationship between the frequency of BRAF mutation and age in sporadic tumors is needed to ascertain whether the etiological agent, latent period, and/or age is the cause of this marked difference in mutation frequency.
| Acknowledgments |
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| Footnotes |
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Abbreviations: FA, Follicular adenoma; PTC, papillary thyroid carcinoma; SSCP, single strand conformation polymorphism.
Received December 30, 2003.
Accepted April 16, 2004.
| References |
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