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Department of Life Sciences (B.N.C., L.G.B.), Faculty of Science and Agriculture, University of the West Indies, St. Augustine, Republic of Trinidad and Tobago; Department of Molecular and Cell Biology (G.B., A.B.A., K.D.), University of Aberdeen, Institute of Medical Sciences, Foresterhill, Aberdeen, AB25 2ZD, United Kingdom; Department of Biochemistry and Molecular Biology (B.N.C., L.G.B., T.T., G.I.B.), The University of Chicago, Chicago, Illinois 60637; Department of Clinical Medical Sciences (S.T.), Faculty of Medical Sciences, University of the West Indies, St. Augustine, Republic of Trinidad and Tobago; Nutrition and Metabolism Unit (D.M.), Ministry of Health, Republic of Trinidad and Tobago; and Department of Molecular Physiology and Biophysics (R.S.), Vanderbilt University Medical School, Nashville, Tennessee 37232
Address all correspondence and requests for reprints to: B. N. Cockburn, Ph.D., Department of Life Sciences, Faculty of Science and Agriculture, University of the West Indies, St. Augustine, Republic of Trinidad and Tobago. E-mail: bcockburn{at}fans.uwi.tt.
| Abstract |
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| Introduction |
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20 yr) in yr 2000 with diabetes and predicted that this number would increase to 86,000 by yr 2025. The population of Trinidad is comprised of approximately 40% each of people of African and East Indian descent (2). Afro-Trinidadians are descendants of African slaves who were brought to the Caribbean from the early 1500s until slavery was abolished around 1834. The Indo-Trinidadians are descendants of indentured laborers who first started migrating from India to the island in 1845. They came primarily from the Gangetic Plain, from areas known today as Uttar Pradesh in the north, and the eastern region of Bihar. A smaller number also came from the northern region of Punjab, from Bengal in the east, and from Madras in the south. The remaining 20% of the population comprises individuals of mixed ethnicity (18%) with 2% being members of other ethnic groups including Caucasians (from Western European countries), Chinese, and Amerindians. Genetic studies of diabetes are revealing the complex nature of this disease and providing new insight into the molecular mechanisms (3, 4). We have begun to study the genetics of diabetes in Trinidad with the goal of improving its diagnosis and treatment in this ethnically diverse population. As a first step, we are screening Indo- and Afro-Trinidadian patients with early-onset type 2 diabetes (diagnosed before 40 yr of age) and a family history of type 2 diabetes in at least two generations for mutations in genes associated with maturity-onset diabetes of the young (MODY) (3).
IPF-1, also known as pancreatic duodenal homeobox-1 (PDX-1), plays an important role in regulating the development and normal function of the pancreatic ß-cell (5). Complete deficiency of IPF-1 results in pancreatic agenesis and permanent neonatal diabetes, whereas mutations in the heterozygous state have been associated with both the type 4 form of MODY4 and type 2 diabetes (6, 7, 8). We screened 264 diabetic subjects for mutation in IPF1. We identified two mutations resulting in the synthesis of a mutant protein including a new missense mutation, E224K, two new silent mutations, and a new mutation in the 5'-untranslated region. We report the clinical features of patients with the E224K mutations and the effect of this mutation on IPF-1 function.
| Subjects and Methods |
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Diabetic patients were recruited from the diabetic outpatient clinics of the two major hospitals in Trinidad: the Port of Spain and San Fernando General Hospitals. Approval for the study was obtained from the Ethics Committees of both hospitals, and sampling took place over a 3-month period. Additionally, 12 diabetic individuals visiting a private clinic were recruited. The patient group consisted of 169 unrelated subjects of East Indian descent (Indo-Trinidadian), 66 of African descent (Afro-Trinidadian), and 29 of mixed ancestry. All individuals were diagnosed with type 2 diabetes before 40 yr of age and had a history of family type 2 diabetes in at least two generations. Race was assigned on the basis of the subject possessing at least three grandparents belonging to the same racial group (9). Subjects of mixed ancestry were predominantly of African and East Indian descent but also included some with European, Chinese, or Amerindian backgrounds. Nondiabetic subjects (60 Indo-Trinidadian, 60 Afro-Trinidadian, and 11 of mixed ancestry) were recruited from the Chest Clinic at Mt. Hope Hospital (Champs Fleurs, Trinidad and Tobago) and from San Fernando General Hospital (San Fernando, CA). Additional control subjects were obtained from various health centers throughout the island. After giving written consent, subjects were interviewed further to complete a medical questionnaire, and anthropometric measurements were taken. Assisting physicians examined the patients to determine their health status and the presence of any diabetes-related complications and to obtain a blood sample for DNA isolation. The nondiabetic subjects were nondiabetic by history and had normal urine or fasting blood glucose levels. In the absence of oral glucose tolerance testing (OGTT), we cannot exclude the presence of some individuals with have unrecognized diabetes.
Mutation screening
The minimal promoter, coding region, and adjacent introns of IPF1 were screened for mutations in diabetic and nondiabetic subjects by direct sequencing of the PCR product as described previously (10). Mutations discovered were confirmed by sequencing the opposite strand and by cloning the PCR product into pGEM-3Z (Promega, Madison, WI) and sequencing individual clones.
OGTT
After an overnight 12-h fast, blood samples were obtained at 0 min. Dextrose (75 g) was then administered orally, and blood samples were obtained at 30, 60, and 120 min for measurement of glucose, insulin, and C peptide concentrations. Plasma glucose was measured using a glucose analyzer (Model 2300 STAT, YSI Inc., Yellow Springs, OH). The coefficient of variation of this method is less than 2%. Serum insulin was assayed by a double-antibody technique with a lower limit of sensitivity of 20 pmol/liter and an average intraassay coefficient of variation of 6%. The cross-reactivity of proinsulin in the RIA for insulin is approximately 40%. Plasma C peptide was measured by RIA. The lower limit of sensitivity of the assay is 0.02 pmol/ml, and the intraassay coefficient of variation is 6%.
Functional studies of wild-type (WT) and mutant IPF-1
The E224K mutation was generated using the pALTER-1 system (Promega, Southampton, UK). Mutagenesis was confirmed by direct sequencing of both strands of the plasmid. The WT and mutant (E224K) forms of human IPF-1 were expressed in vitro using the vector pcDNA3 (Invitrogen, Carlsbad, CA). They were also ligated into the simian virus 40 (SV40) promoter-enhancer-driven GAL4 expression plasmid pSG24 (11) to create in-frame GAL4 fusion proteins. The reporter gene construct pGAL4TKCAT contains five copies of the GAL4 DNA binding site cloned upstream of the thymidine kinase (TK) chloramphenicol acetyl transferase (CAT) reporter gene. The FFCAT plasmid contains 5 copies of the sequence -247 to -197 of the rat insulin I gene spanning the A2 element (-212 to-208) that binds IPF-1 and the E2 element (-239 to-228) that binds E47 (12). E47 was expressed using the SV40 promoter enhancer of plasmid pJ3
(13). We used pRSV-luciferase as an internal control. Plasmid DNA was prepared using the QIAGEN (Valencia, CA) endotoxin-free method and quantified spectrophotometrically.
TC-1 cells, a pancreatic
-cell line (14), were cultured in DMEM containing 25 mM glucose and supplemented with 10% heat-inactivated fetal calf serum (Invitrogen, Paisley, UK). HeLa cells were cultured in DMEM containing 10% calf serum. Cells were subcultured into six-well plates (5 x 105 cells/well) and grown for 24 h until they reached 80% confluence.
TC-1 cells were first transfected with 1 µg/well of the WT or E224K IPF-1 construct using Lipofectamine-plus reagent (Invitrogen, Paisley, UK). Cells were harvested 48 h after transfection in 1 ml PBS and then centrifuged for 1 min at 12,000 x g. The cell pellets were resuspended in 100 µl buffer containing 10 mM HEPES (pH 7.9), 10 mM KCl, 0.1 mM EDTA, 0.1 mM EGTA, 1 mM dithiothreitol, and 1x Protease Inhibitor Cocktail Solution (Roche, Mannheim, Germany) and allowed to swell for 25 min on ice before adding 6 µl of 10% (vol/vol) Nonidet P-40. Cells were then vortexed for 15 sec and centrifuged for 1 min at 12,000 x g at 4 C. The supernatant was removed and stored as cytoplasmic extract. The nuclear pellets were resuspended in 50 µl ice-cold buffer containing 20 mM HEPES (pH 7.9), 0.4 M NaCl, 1 mM EDTA, 1 mM dithiothreitol, 1x Protease Inhibitor Cocktail Solution, and 5% (vol/vol) glycerol and shaken for 1 h. The nuclear extract was then centrifuged for 1 min at 12,000 x g at 4 C and the supernatant removed and stored at-70 C. Protein concentrations were determined using the Bio-Rad Protein Assay II System (Bio-Rad, Hercules, CA).
Western blot analysis was carried out using a specific IPF-1 antibody (a kind gift from Dr. C. V. Wright, Vanderbilt University). Three micrograms of nuclear or cytoplasmic protein extract from transfected cells were fractionated by SDS-PAGE on a 10% acrylamide gel and blotted onto ECL-nitrocellulose membrane (Amersham, Amersham, UK). The membrane was incubated overnight in a buffer containing 20 mM Tris-HCl (pH 7.4) containing 0.2 M NaCl, 0.1% Tween 20, 5% nonfat milk powder, and an 1:5,000 dilution of anti-IPF-1 antibody. The antigen-antibody complex was detected by incubating the membrane for 60 min in buffer containing a 1:10,000 dilution of horseradish-peroxidase-conjugated antirabbit IgG secondary antibody.
Analysis of IPF-1 binding activity was done by EMSA using the A3 site of the human insulin gene promoter (15). Three micrograms of transfected nuclear and cytoplasmic extract were incubated with 32P-labeled probe for 20 min at room temperature in buffer containing 10 mM Tris (pH 7.5), 50 mM KCl, 5 mM dithiothreitol, 1 mM EDTA, 0.5 µg dI.dC, and 5% (vol/vol) glycerol. The samples were then run on a 6% acrylamide gel at 150 V for 2 h. The labeled IPF-1 binding complex was detected by autoradiography.
The subcellular localization of WT and E224K IPF-1 in
TC-1 cells was determined by immunohistochemical analysis. Cells were grown on two-chamber slides for 24 h and then transfected as described above. After transfection, the cells were washed twice with PBS and then fixed in 4% formaldehyde, 0.1% Tween 20, and PBS for 1 h at room temperature. The fixed cells were then incubated for 1 h at room temperature in blocking buffer containing 10 mg/ml BSA and 0.1% Tween 20 in PBS. Primary anti-IPF-1 antibody (1:800 dilution) was added to each chamber in 1 mg/ml BSA and 0.1% Tween 20 in PBS and incubated for 1 h at room temperature. After three washes in 0.1% Tween 20 in PBS, fluorescein isothiocyanate-conjugated second antibody (1:400 dilution) was added to each chamber and incubated at room temperature for 1 h in the dark. Cells were finally washed three times with 0.1% Tween 20 in PBS and mounted with Vectashield (Vector Laboratories, Burlingame, CA) mounting medium containing 4',6-diamidino-2-phenylindole for nuclear staining. Fluorescence microscopy was carried out using a Zeiss Axioplan II microscope (Carl Zeiss, Thornwood, NY). Control samples containing only primary antibody or second antibody stained negative.
The transactivation properties of WT and E224K IPF-1 were analyzed in transfected
TC-1 and HeLa cells using the Gal4 DNA binding domain system (16). The GAL4WT and GAL4E224K fusion constructs described above (0.5 µg/well) were cotransfected into
TC-1 cells together with the reporter plasmid pGAL4TKCAT (0.5 µg/well). CAT activity was measured by using the QUAN-T-CAT Assay System (Amersham). The effect of IPF-1 and E224K on FFCAT activity was examined in HeLa cells transfected in triplicate in six-well plates using Lipofectamine reagent and 500 ng FFCAT, 250 ng pRSV-Luc, 250 ng of pcDNA3-IPF1, pcDNA3-E224K, or the pCMV4 vector (Invitrogen). The Rous Sarcoma Virus enhancer-driven luciferase construct (pRSV-LUC) served as an internal transfection control in these assays. Forty-eight hours later, the cells were harvested and cell extracts assayed for CAT and/or luciferase activity (13).
Data analysis
In transfection studies, significant differences were assessed using the unpaired t test. The insulinogenic index at 30 min (Insulinogenic index30) was determined as described by Seltzer et al. (17): Insulinogenic index30 = Insulin30 (pmol/liter) - Insulin0 (pmol/liter)/Glucose30 (mg/dl) - Glucose0 (mg/dl). Homeostatic model assessment insulin resistance (HOMA-R) was estimated as described by Matthews et al. (18): Insulin0 min (µU/ml) x Glucose0 min (mg/dl)/405. Group differences for Insulinogenic index30 and HOMA-R were assessed using an unpaired t test. A P-value < 0.05 was considered statistically significant.
| Results |
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Clinical characteristics of the study population are described in Table 1
. Diabetic subjects, the Indo-Trinidadians had a lower body mass index than Afro-Trinidadians although the difference was not significant.
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We screened 395 unrelated diabetic (n = 264) and nondiabetic subjects (n = 131) for mutations in IPF1 using PCR and direct sequencing. We found five mutations (Table 2
). They included the previously described type 2 diabetes-predisposing mutation IPF1-c.724 726dupCCG (P242 P243dupP) which was present in 3 of 66 Afro-Trinidadians with early-onset diabetes, 1 of 60 nondiabetic Afro-Trinidadian controls, and 1 of 29 individuals of mixed ancestry with early-onset diabetes (7, 8). The other four mutations have not been previously reported and include a substitution in the 5'-untranslated region (c.-18C>T), two silent mutations (c.162G>A and c.768C>A), and a missense mutation E224K (c.670G>A). All of the mutations were found in the heterozygous state, and we observed no compound heterozygotes.
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The E224K mutation cosegregated with early-onset diabetes/IGT in the TT001 pedigree (Fig. 1
). In generation III, four carriers were diagnosed with diabetes or IGT between 1321 yr. The only carrier in the TT001 pedigree who did not have diabetes or IGT was an 11-yr-old girl (subject III-8). She presently has normal glucose tolerance, by OGTT, but may develop diabetes in the future. The early-onset and cosegregation of the E224K mutation with diabetes in the TT001 pedigree is consistent with a diagnosis of MODY4 (6). There are also noncarriers in the TT001 pedigree who have diabetes or IGT, indicating that the E224K in IPF1 is not the only cause of diabetes in this family. Such genetic heterogeneity has been noted in other MODY families (19, 20).
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OGTT in subjects with the E224K mutation
We carried out OGTT in diabetic (subjects II-4, II-8, III-1, and III-3) and nondiabetic (III-8) E224K carriers in the TT001 pedigree (Fig. 1
) and five unrelated nondiabetic/nonmutation subjects. We used the Insulinogenic index30 as a measure of ß-cell function and HOMA-R to assess insulin resistance (17, 18). The diabetic carriers exhibited a significant reduction (P < 0.05) in ß-cell function compared with nondiabetic/nonmutation subjects (Fig. 2
). There was no significant difference in HOMA-R between these two groups. The results are consistent with a ß-cell defect that is present even in the nondiabetic carrier. However, we will need to identify additional nondiabetic carriers to confirm this result. If there is a founder effect for this mutation in the Indo-Trinidadian population, as our genetic data suggest, we may be able to identify other families with the E224K mutation that will allow us to carry out additional clinical studies.
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Residue 224 is in a highly conserved region of IPF1. It is glutamic acid in human, hamster, rat, mouse, frog, and zebra fish IPF-1, implying an important functional role. To study the effect of the E224K mutation on the different properties of IPF-1, we first expressed constructs encoding the WT and mutant (E224K) forms of human IPF-1 in
TC-1 cells. These cells were chosen for this study because they are IPF-1 negative and originate from the endocrine pancreas (14). Western blotting analysis showed that both WT and E224K IPF-1 generated a 46-kDa protein that was localized predominantly (90%) in the nuclear fraction (Fig. 3A
). The same subcellular distribution was observed by immunocytochemistry (Fig. 3B
), and no detectable staining was found with the vector alone (pcDNA3).
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TC-1 cells transfected with the WT and E224K plasmids (Fig. 3C
To specifically study effects of the E224K mutation on the transactivation properties of IPF-1, the WT and E224K IPF-1 cDNAs were cloned in frame with the GAL4 DNA binding domain of pSG424 and cotransfected into
TC-1 cells along with the GAL4 DNA binding site linked to the CAT reporter gene. Activation of the CAT reporter gene was 20% less efficient in cells transfected with GAL4:E224K than with GAL4:WT (P < 0.05) (Fig. 4
). The transactivation properties of IPF-1 were also studied in HeLa cells using FFCAT, a rat insulin I enhancer-driven reporter whose activity is dependent on addition of both IPF-1 and E47 (12, 21). As observed with the GAL4:IPF chimera, E224K was significantly less active than the WT (P < 0.001) (Fig. 5A
). In both transfection systems, the reduced activation properties were not due to a change in the expression or stability of the E224K mutant (Fig. 5B
; data not shown).
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| Discussion |
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We identified a new mutation in IPF1, E224K, which may result in MODY4. Preliminary clinical studies of diabetic and nondiabetic carriers suggest that this mutation affects ß-cell function. We identified this mutation in two ostensibly unrelated individuals. However, it occurred on the same extended haplotype, suggesting a common origin for the mutant allele (founder effect). Thus, additional individuals and families with this mutation may be found among the Indo-Trinidadian population.
We characterized the effect of the E224K mutation on human IPF-1 function. It does not appear to affect the expression, nuclear localization, or DNA-binding properties of IPF-1. This is not surprising because sequences involved in DNA-binding and nuclear localization have been mapped within the homeodomain, amino acids 146206 (22, 23), and deletion of COOH-terminal sequences (amino acids 206283) have no effect on these parameters (24). The E224K mutation resulted in a modest but significant reduction in IPF-1 transactivation as a GAL4 fusion protein and in synergistic action with E47 (Figs. 4
and 5
). The major transactivation sequences within IPF-1 have been mapped to a proline-rich region at the NH2 terminus (16, 24). The activity of this transactivation domain, which contains three subdomains, can be stimulated by glucose (25, 26). Sequences toward the COOH terminus have no intrinsic transactivation activity. However, successive deletion of these sequences results in both enhancement and diminution of transactivation. This suggests that the COOH-terminal region of IPF-1 may be involved in protein-protein interactions that act synergistically to enhance or modulate the activity of the N-terminal domain (24). A possible candidate for this COOH-terminal interacting protein is a recently described 41-kDa nuclear protein, named PCIF1 (27).
Although our results show that the E224K mutation affects the transactivation properties of IPF-1, they do not explain why this defect leads to the development of diabetes. It is possible that the modest effect on IPF-1 activity reduces the levels of the IPF-1 target genes that are important in regulating normal ß-cell function and mass (28, 29, 30).
In summary, mutations in the IPF-1 gene may be associated with MODY4 (E224K) in the Indo-Trinidadian population and a contributing factor in the development of type 2 diabetes in Afro-Trinidadians (P242 P243dupP). A registry of patients with these mutations could lead to a better understanding of the role of this gene in the development of diabetes in this community and improve diagnosis and treatment.
| Acknowledgments |
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| Footnotes |
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Abbreviations: CAT, Chloramphenicol acetyl transferase; HOMA-R, homeostatic model assessment insulin resistance; IGT, impaired glucose tolerance; IPF-1, insulin promoter factor-1; MODY, maturity-onset diabetes of the young; OGTT, oral glucose tolerance testing; PDX-1, pancreatic duodenal homeobox-1; SV, simian virus; TK, thymidine kinase; WT, wild-type.
Received July 23, 2003.
Accepted October 20, 2003.
| References |
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