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The Journal of Clinical Endocrinology & Metabolism Vol. 86, No. 10 4943-4950
Copyright © 2001 by The Endocrine Society


Other Original Articles

Mutation of Three Critical Amino Acids of the N-Terminal Domain of IGF-Binding Protein-3 Essential for High Affinity IGF Binding

C. K. Buckway, E. M. Wilson, M. Ahlsén, P. Bang, Y. Oh and R. G. Rosenfeld

Department of Pediatrics, Oregon Health Sciences University (C.K.B., E.M.W., Y.O., R.G.R.), Portland, Oregon 97201; and Department of Woman and Child Health, Karolinska Institute and Hospital (M.A., P.B.), Stockholm, Sweden

Address all correspondence and requests for reprints to: Caroline K. Buckway, M.D., Department of Pediatrics, NRC-5, Oregon Health Sciences University, 3181 SW Sam Jackson Park Road, Portland, Oregon 97201. E-mail: buckwayc{at}ohsu.edu

Abstract

The N-terminal domain is conserved in all members of the IGF-binding protein superfamily. Most recently, studies have demonstrated the importance of an IGF-binding protein N-terminal hydrophobic pocket for IGF binding. To examine more critically the amino acids important for IGF binding within the full-length IGF-binding protein-3 protein while minimizing changes in the tertiary structure, we targeted residues I56, L80, and L81 within the proposed hydrophobic pocket for mutation. With a single change at these sites to the nonconserved glycine there was a notable decrease in binding. A greater reduction was seen when both L80 and L81 were substituted with glycine, and complete loss of affinity for IGF-I and IGF-II occurred when all three targeted amino acids were changed to glycine. Furthermore, the ability of the IGF-binding protein-3 mutants to inhibit IGF-I-stimulated phosphorylation of its receptor was a reflection of their affinity for IGF, with the lowest affinity mutants having the least inhibitory effect.

These studies, thus, support the hypothesis that an N-terminal hydrophobic pocket is the primary site of high affinity binding of IGF to IGF-binding protein-3. The mutants provide a tool for future studies directed at IGF-dependent and IGF-independent actions of IGF-binding protein-3.

OVER THE LAST decade, the role of the IGF system in growth has been extensively studied. IGF-I and -II are potent mitogens that are tightly regulated in vivo by the six IGF-binding proteins (IGFBPs), for which they have high affinity (1, 2). IGFBP-3 is the most abundant binding protein in human serum and the major carrier of IGF-I in the circulation (3). Although IGFBP-3 can attenuate the effects of IGF-I by sequestering it from its receptor (4), IGFBP-3 may also act independently of IGF-I via a putative receptor (5), inhibiting cellular proliferation (6, 7, 8, 9, 10, 11). Using synthetic IGFBP-3 fragments, Yamanaka et al. (12) presented evidence that the nonconserved midregion of IGFBP-3 most likely contains the IGFBP-3 receptor-binding site and, presumably, the ability to inhibit cellular growth in an IGF-independent manner.

Structural analysis of IGFBP-1 to -6 reveals similar modular construction, with the greatest similarity (58%) in the N-terminus, including 12 cysteines in IGFBP-1 to -5 and 10 cysteines in IGFBP-6 (13). The mid region is highly variable, but the C-terminus has 34% similarity, containing another cysteine-rich region. Much of our knowledge of the function of these regions has been learned through the examination of proteolytic and synthetic IGFBP fragments and through directed mutational analysis. Several laboratories have shown from fragment analysis that the N-terminus contains an IGF-binding site (14, 15, 16, 17, 18, 19, 20), but a few others have also suggested another binding region in the C-terminus (21, 22, 23).

The three-dimensional structures of IGF-I (24) and IGF-II (25) have been known since the early 1990s, but other than the regional domains very little is known of the three-dimensional structures of the IGFBPs, with the exception of recent work by Kalus et al. (26). These investigators proposed an N-terminal hydrophobic patch (amino acids V49, Y50, P62, and K68 to L74) in IGFBP-5 critical for the binding of IGF-II based on analysis of an IGFBP-5 fragment (A40 to I92) by solution nuclear magnetic resonance (NMR) spectroscopy. Recent work after this study validated this hypothesis in full-length IGFBP-5 and also the conserved region in IGFBP-3 by substituting five amino acids in this pocket with neutral or nonhydrophobic residues, thereby reducing IGF-I affinity by more than 1000-fold (27).

Preliminary evidence from our laboratory of analysis of small fragments of the IGFBP-3 N-terminus also led us to believe it to be the primary site of IGF binding. Based on the work by Kalus (26) as well as our preliminary IGFBP-3 deletional analysis, we targeted three amino acids within the hydrophobic pocket (I56, L80, and L81) likely to have significant effects on IGF affinity. We compared both conserved and nonconserved amino acid changes, mutating one, two, and three residues at a time. Our goal was to disrupt the binding site, but with the fewest number of residue alterations so that the least degree of disruption to the tertiary structure of the protein would occur. Our data support the existence of a high affinity hydrophobic IGF-binding site in the N-terminus of IGFBP-3, probably conserved throughout the IGFBPs, which, when disrupted, can affect the IGF-dependent biological functions of IGFBP-3.

Materials and Methods

Materials

[125I]IGF-I and -II were provided by Diagnostics Systems Laboratories, Inc. (Webster, TX). IGF-I and -II were purchased from Austral Biologicals (Santa Clara, CA). Reagents for SDS-PAGE were purchased from Bio-Rad Laboratories, Inc. (Hercules, CA). The BIAcore X instrument, sensor chip CM5 (research grade), HBS-EP buffer (0.01 M HEPES, 0.15 M NaCl, 3 mM EDTA, and 0.005% surfactant P20, pH 7.4), and the amine coupling kit containing N-hydroxysuccinimide, N-ethyl-N'-(3-diethylaminopropyl)carbodiimide, and ethanolamine hydrochloride were purchased from BIAcore AB (Uppsala, Sweden). For use in the BIAcore analysis, recombinant human IGF-I (rhIGF-I) was a gift from Genentech, Inc. (South San Francisco, CA), and rhIGF-II was a gift from Pharmacia Biotech (Uppsala, Sweden).

Cell culture

COS-7 cells were obtained from American Type Culture Collection (Manassas, VA) and grown in DMEM with 10% FCS at 37 C in 5% CO2. NIH-3T3 cells were a gift from Dr. C. T. Roberts, Jr. (Oregon Health Sciences University, Portland, OR), and were grown in DMEM with 10% FCS and 500 µg/ml G418 at 37 C in 5% CO2. All tissue culture media and components were purchased from Life Technologies, Inc. (Grand Island, NY), except FCS, which was obtained from HyClone Laboratories, Inc. (Logan, UT).

Generation, purification, and quantitation of recombinant IGFBP-3 deletion fragments, wild-type and mutants

The cDNAs of IGFBP-3-(1–46), -(1–75), -(1–80), and -(1–87) FLAG epitope-tagged fragments were generated by PCR amplification from the human IGFBP-3 cDNA and a C-terminal FLAG epitope sequence (DYKDDDDK). After sequencing sense and antisense strands, the fragments were subcloned into pGEX4T-1 (Amersham Pharmacia Biotech, Piscataway, NJ) and transformed into BL21DE3 Escherichia coli cells, cultured overnight in Luria-Bertoni broth/ampicillin, and induced with 2 mM isopropylthio-ß-D-galactoside. Cell lysates were then harvested, analyzed by SDS-PAGE staining with Coomassie blue and by Western immunoblot with M2 anti-FLAG antibody (Eastman Kodak Co., Rochester, NY).

The preparation of expression vector pBSSK:IGFBP-3, containing a full-length human IGFBP-3 cDNA with a C-terminal FLAG epitope sequence (DYKDDDDK), by PCR amplification has been described previously (28). Single stranded phagemid DNA was generated from pBSSK:IGFBP-3FLAG, and mutations were introduced using synthetic degenerate oligonucleotides as substrates for antisense DNA synthesis. The following complementary oligonucleotide was used to mutate I56 to V56 or G56 with an AclI site: agc gag ggc cag ccg tgc ggc rkc tac acc gaa cgt tgt ggc tcc ggc ctt cgc (r = a or c; k = t or g). The following complementary oligonucleotide was used to mutate L80 and L81 to V80 or G80 and/or V81 or G81 without a PstI site: gag gcg cga ccg ctg caa gcg skg skg gac ggc cgc ggg ctc tgc gt (s = c or g; k = t or g). Sense and antisense strands were sequenced, and preparations were subcloned into pCMV6 for transient transfections of COS-7 cells, into pGEX4T-1 for generation of E. coli glutathione-S-transferase (GST) fusion cell lysates as described above, and into pFASTBAC1 (Life Technologies, Inc., Grand Island, NY) for baculovirus-generated proteins as described below. The full-length IGFBP-3 triple G mutant was constructed by subcloning a G80G81 fragment into the pCMV6:G56 mutant with BamHI and BstAPI.

pFASTBAC1 preps were transformed into DH10Bac E. coli cells. The amplified DNA was transfected into Sf9 insect cells (American Type Culture Collection). HIGH-5 insect cells (Invitrogen, Carlsbad, CA) were infected with P2 virus. The media were harvested on the third day and incubated with an anti-M2 antibody affinity column overnight at 4 C. The FLAG-tagged protein was then eluted by using FLAG peptide as described previously (29). Eluted fractions were analyzed on 12% SDS-PAGE under nonreducing conditions, followed by staining with Coomassie blue. Fractions were pooled and quantitated by two methods: 1) comparison with known quantities of baculovirus IGFBP-3 by silver staining (Bio-Rad Laboratories, Inc.), and 2) IGFBP-3 immunoradiometric assay (IRMA; Diagnostics Systems Laboratories, Inc.).

Transient transfections of COS-7 cells

Cells were plated in six-well plates, grown to 50–70% confluence, and transfected with a 1:2 ratio of cDNA and Mirrus Transit LT-1 (PanVera, Madison, WI). Medium was changed to serum-free medium after 16 h, then collected 48 h later, and cellular debris was removed by centrifugation. COS-7 cells have some endogenous IGFBP-3 secretion, so the conditioned medium was immunoprecipitated with M2 anti-FLAG antibody to pull out only the IGFBP-3 that had resulted from transient transfections.

Western ligand blot analysis

Samples of E. coli-generated GST fusion cell lysates, purified baculovirus-expressed proteins, or conditioned medium at the concentrations indicated in the figure legends were mixed with Laemmli sample buffer without a reducing agent and heated at 95 C for 5 min, then electrophoresed on a 12% SDS gel and electroblotted onto nitrocellulose. For dot blots, 2.5 µl sample were dotted directly onto the nitrocellulose membrane. Membranes were then blocked for 1 h at 21 C in 1% BSA/TBS-T (Tris-buffered saline-0.1% Tween 20), then incubated at 4 C overnight with 1 x 106 cpm [125I]IGF-I, [125I]IGF-II, or a mixture of the two. The membranes were then washed, dried, and exposed to Biomax MS film (Eastman Kodak Co.). The same membranes were then probed with antibodies as described below. Bands were quantified using an image analyzer (GS-700) equipped with MultiAnalyst version 1.0.2 software (Bio-Rad Laboratories, Inc.).

Western immunoblot analysis

Samples of E. coli-generated GST fusion cell lysates, purified baculovirus-expressed proteins, whole cell lysates, or conditioned medium at the concentrations indicated in the figure legends were mixed with Laemmli sample buffer with or without a reducing agent and heated at 95 C for 5 min, then subjected to SDS-PAGE (8% or 12% gels) and electroblotted onto nitrocellulose membranes. For dot blots, 2.5 µl sample were dotted directly onto the nitrocellulose membrane. The membranes were then blocked for 1 h at 21 C in 4% milk/TBS-T, followed by overnight incubation at 4 C with anti-IGFBP-3 monoclonal antibody (Diagnostics Systems Laboratories, Inc.), anti-GST polyclonal antibody (Amersham Pharmacia Biotech, Piscataway, NJ), anti-PY20 monoclonal antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), or antiinsulin receptor substrate-1 (anti-IRS-1) polyclonal antibody (Upstate Biotechnology, Inc., Lake Placid, NY), all at 1:3000 dilutions. Membranes were washed with TBS-T and incubated for 1 h at 21 C with a 1:3000 dilution of horseradish peroxidase-linked antirabbit or antimouse IgG secondary antibodies (Amersham Pharmacia Biotech, Piscataway, NJ). Proteins were detected by enhanced chemiluminescence reagents, according to the manufacturer’s protocol (NEN Life Science Products, Boston, MA).

Affinity cross-linking

E. coli-generated GST fusion cell lysates of full-length IGFBP-3 or mutants were incubated with 50,000 cpm [125I]IGF-I in the presence or absence of unlabeled IGF-I (100 nM) overnight at 4 C and then cross-linked with 0.5 mM disuccinimidyl suberate for 15 min at 4 C. The samples were quenched with 100 mM Tris, pH 7.4, and were then subjected to 12% SDS-PAGE and autoradiography on Biomax MS film (Eastman Kodak Co.).

Solution binding assay

Increasing amounts (0–100 ng/ml) of purified baculovirus IGFBP-3 or mutant proteins in duplicate were incubated in 500 µl buffer (50 mM Tris, pH 7.4, and 0.5% BSA) with 10,000 cpm [125I]IGF-I at 4 C overnight. One milliliter of activated charcoal solution (0.5% activated charcoal, 0.2 mg/ml protamine sulfate, and 1% BSA in PBS) was added for 10 min and then centrifuged for 10 min at 4000 rpm at 4 C to separate bound and free IGF-I. A {gamma}-counter was used to measure the radioactivity of the supernatants.

BIAcore analysis

Equal volumes of N-hydroxysuccinimide and N-ethyl-N'-(3-diethylaminopropyl)carbodiimide were mixed, and 35 µl of the mixture were injected over the surface of the sensor chip to activate the carboxymethylated dextran. Eighty-three microliters of purified baculovirus-generated wild-type or mutant IGFBP-3 solution (15 µg/ml in 10 mM sodium acetate, pH 4.5) were injected over the activated surface, followed by 35 µl ethanolamine to deactivate remaining active carboxyl groups. The immobilization procedure was carried out at 25 C at a constant flow rate of 5 µl/min. The first of the two flow cells of each chip was used as an in-line blank reference cell. The carboxymethylated dextran in the reference cell was activated and deactivated as described above, but without any ligand bound. All experiments were carried out at 25 C at a constant flow rate of 10 µl/min HBS-EP buffer. Thirty-five microliters of the analyte (IGF-I or IGF-II) diluted in HBS-EP buffer were injected over the immobilized wild-type or mutant IGFBP-3, followed by a 5-min period when buffer was passed over the surface. Six concentrations of IGF-I and IGF-II were passed over each chip (3.13, 6.25, 12.5, 25, 50, and 100 nM). All kinetic assays were followed by an injection of 15 µl 0.1 M HCl to dissociate the remaining ligand from the binding protein. The experiment was performed a total of three times. BIAevaluation 3.0 software and SigmaStat were used for data analysis, and a 1:1 mass transfer curve-fitting model was used in the evaluation.

IGF-I-induced IGF-I receptor autophosphorylation assay

Confluent monolayers of NIH-3T3 IGF-I receptor cells were incubated in serum-free medium overnight. Purified baculovirus IGFBP-3 and mutant proteins (250 ng) were incubated with IGF-I (100 ng) in 1 ml DMEM and 0.05% BSA for 30 min at 21 C and then added to the cells for 10 min. The reaction was quenched with solubilization buffer [50 mM Tris (pH 7.5), 2.5 mg/ml sodium deoxycholate, 150 mM sodium chloride, 1 mM sodium orthovanadate, 20 mM sodium fluoride, and 1% Nonidet P-40]. Samples were normalized for protein concentration using a DC protein assay (Bio-Rad Laboratories, Inc.) and were separated on 8% SDS-PAGE under reducing conditions. Anti-PY20 or anti-IRS-1 antibodies were used for Western immunoblot.

Results

Expression and analysis of E. coli-generated GST fusion IGFBP-3 deletion fragments

Fragments of the N-terminus of IGFBP-3 were constructed by PCR amplification and expressed as GST fusion cell lysates in E. coli. Amplification of the peptides was confirmed by SDS-PAGE and Coomassie staining. Binding to [125I]IGF-I was screened by dot-blot analysis (Fig. 1Go, upper panel) as explained in Materials and Methods. Binding was strongly detectable for both full-length IGFBP-3 and for IGFBP-3-(1–87) GST fusion fragment. No binding was detectable for the smaller fragments (1–80, 1–75, and 1–46).



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Figure 1. Ligand dot blot of IGFBP-3 deletion fragments with [125I]IGF-I and -II and corresponding immunoblot with anti-GST antibody. GST fusion E. coli-generated cell lysate (2.5 µl) was dotted directly onto nitrocellulose membrane and incubated overnight with 1 x 106 cpm [125I]IGF-I and –II (upper panel). Blots representative of at least two separate experiments were also probed with anti-GST antibody (lower panel), showing the presence of approximately equal amounts of protein. Lane 1, IGFBP-3-(1–46); lane 2, IGFBP-3-(1–75); lane 3, IGFBP-3-(1–80); lane 4, IGFBP-3-(1–87); lane 5, full-length IGFBP-3; lane 6, pGEX4T-1 vector alone.

 
Screening binding studies of IGFBP-3 mutant proteins

The studies with deletion fragments indicated that N-terminal residues were crucial to the binding of IGF, consistent with our prior studies and with the NMR solution binding, which predicted a binding pocket in the N-terminus of IGFBP-5. In IGFBP-3, therefore, we mutated three of the amino acids (I56, L80, and L81) in this region in various combinations either to a conserved residue, valine, or to a nonconserved residue, glycine (Fig. 2Go). Initial binding studies were performed by dot-blot analysis (Fig. 3AGo, upper panel) of E. coli GST fusion proteins as described above and confirmed by Western ligand blots on 12% SDS-PAGE (Fig. 3BGo, upper panel). Both methods showed minimal change in binding when the large, nonpolar, hydrophobic residue, valine, was substituted for I56 or for L80L81. However, a clear reduction in binding was observed with substitution of I56 or L80L81 by glycine, a small polar amino acid.



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Figure 2. Consensus sequences of the N-terminus of IGFBP-3 and IGFBP-5. The 10 amino acids predominantly forming the hydrophobic pocket predicted to interact with IGFs based on solution NMR studies of IGFBP-5 are marked with black dots. The amino acids targeted for mutation in our studies are marked with stars. Disulfide bonds are bracketed. Conserved residues are shaded.

 


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Figure 3. Binding studies of full-length mutant IGFBP-3 E. coli-generated GST-fusion cell lysates. A, Ligand dot blot (upper panel) of 2.5 µl cell lysate dotted directly onto nitrocellulose membrane and incubated overnight with 1 x 106 cpm [125I]IGF-I and -II, and corresponding immunoblot with anti-GST antibody (lower panel). Lanes from left to right, IGFBP-3, pGEX4T-1 vector, G56 mutant, V56 mutant, G80G81 mutant, and V80V81 mutant. B, Western ligand blot (upper panel) using 20 µl protein/lane on a 12% SDS-PAGE gel under nonreducing conditions, incubated overnight with 1 x 106 cpm [125I]IGF-I and -II; the same membrane was probed with anti-GST antibody (lower panel) for comparison of cell lysate concentrations. Lanes are described in A. C, Affinity cross-linking of 20 µl protein with 50,000 cpm [125I]IGF-I after overnight incubation at 4 C, run on 12% SDS-PAGE, and exposed to film. Each set of three lanes shows duplicate cross-linking and competition by unlabeled IGF-I (lanes marked with asterisk). Lanes 1 and 2, IGFBP-3; lane 3, IGFBP-3 with competition by unlabeled IGF-I; lanes 4 and 5, pGEX4T-1 vector alone; lane 6, pGEX4T-1 with unlabeled IGF-I; lanes 7 and 8, G56; lane 9, G56 with unlabeled IGF-I; lanes 10 and 11, G80G81; lane 12, G80G81 with unlabeled IGF-I. All blots shown are representative of at least two separate experiments.

 
As predicted, the valine mutants showed relatively little change in IGF affinity, and they were not further tested. The glycine mutants, however, were also tested in an affinity cross-linking study in which they were incubated with [125I]IGF-I and cross-linked before gel electrophoresis. Again, a clear reduction in binding was evident with the G56 mutant, whereas virtually no binding was detectable with the G80G81 mutant (Fig. 3CGo). The binding of [125I]IGF-I to the G56 mutant was specific, as it could be competed with unlabeled IGF-I.

To examine any differences between E. coli and mammalian expressed proteins, we tested conditioned medium collected from COS-7 cells that had been transiently transfected with the cDNAs of our glycine mutants. The medium was immunoprecipitated with the M2 anti-FLAG antibody before analysis to remove any endogenous IGFBP-3 that may have been produced by the COS-7 cells. On Western ligand blot, reductions in binding were evident for all of the glycine-substituted mutants, with G81 the least affected and with IGF binding by G80G81 (double G) and G56G80G81 (triple G) abolished (Fig. 4Go).



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Figure 4. Binding studies of immunoprecipitated conditioned medium from COS-7 cells transiently transfected with full-length wild-type and mutant IGFBP-3 cDNA. Western ligand blot (upper panel) of conditioned medium collected 48 h after transfection of cells, immunoprecipitated with M2 anti-FLAG antibody to distinguish them from endogenous IGFBP-3 of COS-7 cells, subjected to 12% SDS-PAGE, and incubated overnight 4 C with 1 x 106 cpm [125I]IGF-I. The same membrane probed with anti-IGFBP-3 antibody to assess the quantity of protein loaded (lower panel). Lane 1, IGFBP-3; lane 2, G81 mutant; lane 3, pCMV6 vector alone (vt); lane 4, G56 mutant; lane 5, G80 mutant; lane 6, G80G81 mutant; lane 7, G56G80G81 mutant; lane 8, empty; lane 9, rhIGFBP-3. Blots shown are representative of at least three different experiments.

 
Characterization of baculovirus-expressed IGFBP-3 mutant proteins

Based upon the results of the above-described screening binding studies, we chose to produce the following four FLAG-tagged, mutant human IGFBP-3 proteins in a baculovirus system: G56, G80, G80G81 (double G), and G56G80G81 (triple G). The proteins were purified over an M2 FLAG antibody affinity column. The purity of the pooled fractions was verified by silver staining of protein subjected to SDS-PAGE and was quantitated relative to known quantities of baculovirus-generated human IGFBP-3. Quantitation was confirmed subsequently by IRMAs. The mutations introduced did not interfere with the ability of the peptide to be recognized by the anti-IGFBP-3 antibodies used in the assay, and parallel curves of the mutants were generated with each assay run, suggesting minimal disruption of the tertiary structure and the epitopes recognized by the antibodies.

When quantified by densitometry (Fig. 5Go, graph), bands detected by Western ligand analysis (Fig. 5Go, upper panel) showed a 60% reduction in binding of IGF-I for G56, a 70% reduction for G80, and a reduction to background level for the double G and triple G mutants. No binding was seen for the double G or triple G mutants, even with exposures of up to 1 wk. Similar levels of binding were seen when the ligand used was IGF-II (data not shown). Verification of the quantity of protein loaded (50 ng/lane) was made by immunoblot with anti-IGFBP-3 monoclonal antibody (Fig. 5Go, lower panel). Similar quantitation results for mutant proteins were observed on immunoblots using an anti-IGFBP-3 polyclonal antibody produced in our laboratory (data not shown).



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Figure 5. Western ligand blot of purified baculovirus-generated, full-length, human IGFBP-3, wild-type and mutants. Fifty nanograms of purified protein were loaded and run on 12% SDS-PAGE, then incubated overnight with 1 x 106 cpm [125I]IGF-I (upper panel). A corresponding immunoblot was probed with anti-IGFBP-3 antibody (lower panel). Lanes from left to right: IGFBP-3, G56 mutant, G80 mutant, G80G81 mutant (double G), and G56G80G81 mutant (triple G). The graph shows densitometric analysis of bands representing the mean percent binding, assuming wild-type IGFBP-3 to be 100%. At least three separate experiments were performed, with error bars representing ±1 SD. No binding was detectable for double G or triple G, even when membranes were exposed to film up to 7 d.

 
Solution binding assays were more sensitive than ligand blots for determining subtle differences in binding of IGF-I and -II by the single amino acid mutants (G56 and G80). Differences in affinity for IGF-I and -II were more apparent by this method; specifically, the affinity for IGF-II was less affected than that for IGF-I in mutants G56 and G80. However, the double G and the triple G mutants still showed little, if any, binding by either ligand blot or solution binding assay (Fig. 6Go).



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Figure 6. Specific binding of [125I]IGF-I and [125I]IGF-II to purified baculovirus-generated IGFBP-3 compared with mutants in solution binding assay. Zero to 100 ng/ml IGFBP-3, wild-type or mutants, were incubated overnight at 4 C in 0.5 ml solution with 10,000 cpm [125I]IGF-I (top graph) or [125I]IGF-II (bottom graph). Activated charcoal solution was then added to precipitate free IGF-I or -II, and the radioactivity of supernatants was counted. Experiments were performed in duplicate at least two or three times. Graph represents the mean percent specific binding, and error bars show ± SD.

 
BIAcore biosensor measurements confirmed the results from the previous binding studies, providing kinetic affinity data for the various IGFBP-3 mutants. Native and the four glycine mutant IGFBP-3 proteins were each covalently bound to a gold biosensor chip, and increasing concentrations of IGF-I or -II were used in the buffer flow. Kinetic parameters are shown in Table 1Go. By this methodology, wild-type IGFBP-3 had a Kd of 0.79 x 10-9 for IGF-I and 0.69 x 10-9 for IGF-II. The G56 mutant had a 1.7-fold lower affinity for IGF-I, whereas the G80 mutant had a 4.3-fold lower affinity for IGF-I, with statistically significant increases in the dissociation rates; both single mutants preserved normal affinity for IGF-II. The double G mutant had only minimal binding to IGF-I and -II, at least 3–4 orders of magnitude lower affinity. The triple G mutant had no detectable binding of either IGF-I or IGF-II.


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Table 1. BIAcore analysis: summary of kinetic data

 
IGF-dependent actions of IGFBP-3 and mutants mirror IGF affinity

IGFBP-3 is known to inhibit IGF-I-stimulated phosphorylation of the type I IGF receptor (IGF-IR) when added to culture medium (4). As the mutants have varying affinities for IGF, we hypothesized they may well have different abilities to modulate this IGF-dependent action. Tyrosine phosphorylation of the ß-subunit of the IGF-IR was seen when COS-7 cells were treated with 100 ng/ml IGF-I, but was blocked when IGF-I and 250 ng/ml wild-type IGFBP-3 were preincubated and then used to treat the cells. Likewise, the G56 mutant still bound IGF-I with sufficient affinity to inhibit phosphorylation. Less inhibition of IGF-I receptor phosphorylation was seen with the other three mutants relative to the degree of loss of IGF affinity; using the triple G mutant, no significant inhibition was observed (Fig. 7Go).



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Figure 7. Ability of IGFBP-3 to inhibit IGF-I-induced phosphorylation of its receptor mirrors the affinity of IGFBP-3 wild-type and mutants. A, Confluent monolayers of NIH-3T3 fibroblasts were serum-starved overnight and treated for 10 min with 100 ng/ml IGF-I alone or after preincubation with 250 ng/ml IGFBP-3 wild-type or mutant protein for 30 min at 21 C. Cell lysates were collected, and equal amounts of protein were run under reducing conditions on 8% SDS-PAGE. Phosphorylation of the ß-subunit of the type I IGF-I receptor was probed with anti-PY20 antibody (upper panel), and equal protein loading was confirmed by immunoblot for anti-IRS-1 antibody (lower panel). Lane 1, No treatment; lane 2, IGFBP-3 alone; lane 3, IGF-I alone; lane 4, IGFBP-3 and IGF-I; lane 5, G56 and IGF-I; lane 6, G80 and IGF-I; lane 7, double G and IGF-I; lane 8, triple G and IGF-I. B, The graph represents the mean densitometric values of three separate experiments ±1 SD of the percent IGF-I-stimulated phosphorylation of the ß-subunit of the type I IGF-R, quantified from the immunoblots, assuming that IGF-I alone stimulates 100%. The affinity of the mutants for IGF is reflected in the degree of inhibition of IGF-stimulated phosphorylation of the receptor.

 
Discussion

Several studies of fragments of IGFBP-3 have provided evidence that IGF binds to both the N-terminus and the C-terminus, but there are no definitive three-dimensional structural analyses of the IGFBPs, including their interactions with the IGFs. The IGF affinity for the N-terminus is clearly less than that of intact IGFBP-3, but is present, as shown in our laboratory, both for 1–87 and 1–97 fragments (20, 30) and for the C-terminal 98–264 IGFBP-3 fragment (23). In general, most investigators agree that both the N-terminus and the C-terminus of the IGFBPs are required to be in the appropriate conformation, stabilized by disulfide bonds, for high affinity IGF binding to occur.

Previous work by Kalus et al. (26) predicted a hydrophobic patch on the N-terminus of IGFBP-5 (residues V49, Y50, P62, and K68 to L74) to be the primary IGF-binding site, based upon studies with solution NMR spectroscopy, using a fragment of IGFBP-5 and IGF-II as the ligand. This work was validated by the finding of a full-length IGFBP-5 mutant with five amino acids changed within this pocket and with reduced affinity for IGF (27); similar results were shown for a full-length IGFBP-3 mutant with the same five residues mutated. Our studies have more definitively defined the crucial amino acids and substantiate the theory of a primary N-terminal IGF-binding site within the IGFBPs, but do not address the necessity of the C-terminus. Based upon N-terminal conservation among the six high affinity binding proteins, we chose to examine three of the amino acids of IGFBP-3 (I56, L80, and L81) corresponding to V49, L73, and L74 within the hydrophobic patch of IGFBP-5 proposed by Kalus et al. (26).

The choice of these mutations was based on several factors. First, the dot-blot screen of the smaller N-terminal fragments showed binding to the IGFBP-3-(1–87) fragment, but not to the IGFBP-3-(1–80) fragment. Deletion of residues 81–87 thus appeared to disrupt a critical region for IGF binding, and amino acid 81 is one of the proposed residues within the hydrophobic pocket. Second, several other reports suggest that this region of the N-terminus has significance. For example, Hashimoto et al. (19) found amino acids E52 to A92 of IGFBP-3 important for binding to IGF-II. In IGFBP4, L72 to S91 were essential for binding in studies by Qin et al. (31), whereas residues C205 to V214 were facilitators of binding rather than primary sites. Third, on the IGFBP-5 fragment described by Kalus et al. (26), side-chains extend into solution from residues V49, L70, and L74, creating a hydrophobic surface corresponding to I56, L77, and L81 in IGFBP-3. In addition, IGFBP-5 residues V49, L70, L73, and L74 had several specific intermolecular interactions with IGF-II by NMR spectra. These studies provided a rationale for speculation concerning which amino acids within the N-terminus have singularly or in combination the greatest effect on IGF affinity without altering the disulfide bonds of these cysteine-rich binding proteins.

Our initial screening studies support the importance of hydrophobic residues for IGF affinity. Valine is a large nonpolar amino acid, as are isoleucine and leucine. When valine was substituted for either isoleucine or leucine, it did not dramatically affect binding. However, when glycine, a small polar residue, was used instead of valine, it produced very different results, with more marked reductions in binding, suggesting that a change from hydrophobic to nonhydrophobic residues was more relevant than the amino acid itself. Binding studies using purified baculovirus-generated protein showed that the substitution of glycine for leucine at position 80 led to the single greatest reduction in affinity and, furthermore, only two mutations (double G mutant) were necessary to reduce binding markedly to both IGF-I and -II by Western ligand blot. On more sensitive solution binding assays, binding was still not detected for the double G or the triple G mutant. BIAcore analysis further validated these findings and, more specifically, provided kinetics data supporting a loss of affinity by the mutants. The lower affinities of the G56 and G80 mutants for IGF-I were statistically significant for increased rates of dissociation, indicating that although IGF-I is able to bind these mutants, the complexes are possibly not as stable as wild-type IGFBP-3. Interestingly, IGF-II binding was not affected for the single mutations. However, for both IGF-I and -II there was absolutely no binding detectable for the triple G mutant and only very minimal binding found for the double G mutant.

In the absence of x-ray crystallography or two-dimensional NMR spectroscopy, it is impossible to exclude the possibility that the observed loss of binding may be secondary to an alteration of the tertiary structure of the protein. However, there are several reasons to believe the disruption of structure to be minimal. Throughout our studies the mutant proteins were easily detectable on immunoblot by both a rabbit anti-IGFBP-3 polyclonal antibody and a monoclonal anti-IGFBP-3 antibody, suggesting that no disruption of the epitopes recognized by these antibodies occurred. Similarly, the quantity of the mutants was accurately measured by an IRMA that used a goat anti-IGFBP-3 polyclonal antibody, and with each assay run, curves of dilutions of mutants and native IGFBP-3 remained parallel. Furthermore, the IGFBP-3 and -5 mutants constructed by Imai et al. (27) that substituted five amino acids with neutral or nonhydrophobic ones both had similar decreases in affinity. They were able to show that IGF-I could not inhibit proteolysis in the IGFBP-5 mutant, whereas it did so in the native form, suggesting that the five-amino acid change did not affect the proteolytic cleavage sites, for which accurate conformation of the protein would be crucial.

Functionally, our results also support the conclusion that IGF-dependent actions of IGFBP-3 are via the sequestration of IGF, thereby inhibiting stimulation of the receptor. This appears to be primarily a function of the N-terminus, rather than the mid region or C-terminus, as previously shown using proteolytic fragments (23). Moreover, our data relate the degree of affinity for IGF with the degree of inhibition of phosphorylation. The lower the affinity a mutant IGFBP-3 has for IGF, the more IGF is able to access the receptor and activate phosphorylation. Very recent studies (32) have suggested that an IGF-independent pathway may also exist in MCF-7 breast cancer cells in which IGFBP-3 inhibits type I IGF-R phosphorylation. Increasing amounts of IGFBP-3, -1, and -5 were used to treat the cells, followed by stimulation with wild-type and mutant forms of IGF-I that have less affinity for the IGFBPs. Only IGFBP-3 inhibited phosphorylation of the receptor by all types of IGF-I tested. In the future similar studies using mutant IGFBP-3 should prove insightful regarding mechanisms and function for both IGF-dependent actions and IGF-independent actions of IGFBP-3.

In conclusion, these data serve to clarify the importance of three amino acids within the N-terminus of IGFBP-3 for IGF affinity and delineate the individual and additive effects of these residues. These results further support the existence of an N-terminal hydrophobic patch as the primary binding site of IGF to IGFBP-3 and suggest that this is similar in the other high affinity binding proteins, given the significant conservation of amino acids within this region.

Acknowledgments

We acknowledge the assistance of Donna Graham and Allison Watts in producing the purified baculovirus proteins, Katherine Pratt for performing the IGFBP-3 IRMAs, Eric Kofoed for technical assistance with the phosphorylation studies, Christine Carlsson-Skwirut for assistance with the BIAcore studies, and Dr. Vivian Hwa for helpful discussion.

Footnotes

This work was supported by NIH grants CA-58110 and DK-51513 (to R.G.R.) and 5T32-HD-07497 (to C.K.B.), Department of Defense Grants 17-96-1-6304 and 17-97-1-7204 (to Y.O.), and grants from the Swedish Medical Research Council (no. 11364), the Karolinska Institute Research Foundation, the Swedish Society of Medicine, the Wera Ekström’s Foundation, the Swedish Freemason’s Foundation, the Märta and Gunnar V. Philipson’s Foundation, the Milk Drop Foundation in Stockholm, and HRH Crown Princess Lovisa’s Society of Pediatric Health Care (to P.B.).

Abbreviations: GST, Glutathione-S-transferase; HBS-EP buffer, 0.01 M HEPES, 0.15 M NaCl, 3 mM EDTA, and 0.005% surfactant P20, pH 7.4; IGFBP, IGF-binding protein; IRMA, immunoradiometric assay; IRS-1, insulin receptor substrate-1; NMR, nuclear magnetic resonance; rhIGF, recombinant human IGF; TBS-T, Tris-buffered saline-0.1% Tween 20.

Received February 5, 2001.

Accepted July 2, 2001.

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