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The Journal of Clinical Endocrinology & Metabolism Vol. 85, No. 1 331-335
Copyright © 2000 by The Endocrine Society


Original Studies

Identification and Functional Analysis of Mutations in the Hepatocyte Nuclear Factor-1{alpha} Gene in Anti-Islet Autoantibody-Negative Japanese Patients with Type 1 Diabetes

Eiji Kawasaki, Yasunori Sera, Kenichi Yamakawa, Takahiro Abe, Masako Ozaki, Shigeo Uotani, Nariyuki Ohtsu, Hirofumi Takino, Hironori Yamasaki, Yoshihiko Yamaguchi, Nobuo Matsuura and Katsumi Eguchi

First Department of Internal Medicine, Nagasaki University School of Medicine, Nagasaki 852-8501; and Department of Pediatrics, Kitasato University School of Medicine (N.O., N.M.), Sagamihara 228-8555, Japan

Address all correspondence and requests for reprints to: Eiji Kawasaki, M.D., First Department of Internal Medicine, Nagasaki University School of Medicine, 1–7-1 Sakamoto, Nagasaki 852-8501, Japan. E-mail: f1196{at}cc.nagasaki-u.ac.jp


    Abstract
 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 
Mutations in the hepatocyte nuclear factor-1{alpha} (HNF-1{alpha}) gene are the cause of maturity-onset diabetes of the young type 3 (MODY 3), which is characterized by a severe impairment of insulin secretion and early onset of the disease. Although the majority of patients with type 1 diabetes have type 1A, immune-mediated diabetes, there is a significant percentage of the patients who have no evidence of an autoimmune disorder at the onset of disease. The aim of this study was to estimate the prevalence of MODY 3 in antiislet autoantibody negative patients with type 1 diabetes. From a large population-based sample of unrelated Japanese patients with type 1 diabetes, 28 patients who lacked autoantibodies to glutamic acid decarboxylase, islet cell antigen 512/insulinoma-associated antigen-2, phogrin (phosphate homolog of granules of insulinoma)/insulinoma-associated antigen-2ß, and insulin at the onset of type 1 diabetes were examined by PCR-based direct sequencing of the 10 exons, flanking introns, and the promoter region of the HNF-1{alpha} gene. Two (7.1%) of 28 autoantibody-negative patients with type 1 diabetes were identified as carrying mutations in the HNF-1{alpha} gene. One patient carried a frameshift mutation (Pro379fsdelCT) in exon 6, and another patient carried a novel 2-bp substitution at nucleotides +45 (G to A) and +46 (C to A) from the transcriptional site of the promoter region. These mutations were identified in heterozygous form and were not identified in 64 unrelated healthy control subjects or 54 unrelated islet autoantibody-positive patients with type 1 diabetes. Functional analysis of the mutant HNF-1{alpha} gene indicated that the Pro379fsdelCT mutation had no transcriptional trans-activation activity and acted in a dominant negative manner. The +45/46 GC to AA mutation in the promoter region showed reduced promoter activity by 10–20% compared to the wild-type sequence. In conclusion, about 7% of Japanese diabetic patients lacking antiislet autoantibodies initially classified as having type 1 diabetes could have diabetes caused by mutations in the HNF-1{alpha} gene.


    Introduction
 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 
MULTIPLE TYPES of diabetes mellitus have been defined by the recent reports of an American Diabetes Association Expert Committee and a WHO consultation based on our current understanding of pathogenesis rather than the requirement for insulin therapy (1, 2). Type 1 diabetes is often associated with chronic and progressive autoimmune destruction of islet ß-cells with a long prodromal phase (3). This type of type 1 diabetes is classified as immune-mediated (type 1A) diabetes. The autoimmune phenomena associated with type 1A diabetes include circulating serum autoantibodies to various islet cell antigens, including glutamic acid decarboxylase (GAD), islet cell antibody 512 (ICA512)/insulinoma-associated antigen-2 (IA-2), and insulin. At least one of these autoantibodies is present at disease onset in more than 90% of patients with type 1 diabetes. However, a significant percentage (5–10%) of patients who have no evidence of an autoimmune disorder at disease onset exist and are classified as idiopathic (type 1B) diabetics (1). Type 1B diabetes may be etiologically heterogeneous, including insulin secretory defects caused by extensive pancreatic islet ß-cell destruction or ß-cell dysfunction.

Maturity-onset diabetes of the young (MODY) is a monogenic form of diabetes characterized by autosomal dominant inheritance, an early age of onset (usually <25 yr of age), and ß-cell dysfunction (4, 5). MODY is genetically heterogeneous, resulting from mutations in at least five genes, the hepatocyte nuclear factor-4{alpha} (HNF-4{alpha}) for MODY1 (6), glucokinase for MODY2 (7), HNF-1{alpha} for MODY3 (8), the insulin promoter factor-1 for MODY4 (9), and the HNF-1ß for MODY5 (10), respectively. The most commonly identified cause of MODY in most racial groups is a mutation in the HNF-1{alpha} gene (MODY3). Although the mechanism of hyperglycemia in MODY3 is not fully understood, the phenotypic characterization of MODY3 families has shown a deficient insulin secretory response to glucose (11, 12). Because of the early age of onset, the severe hyperglycemia, and the deficient insulin secretion of patients with MODY3, we hypothesized that some patients classified as having type 1B diabetes could have MODY3. In this study we screened autoantibody-negative Japanese patients with type 1 diabetes at disease onset for mutations in the HNF-1{alpha} gene and analyzed the functional properties of mutant genes.


    Subjects and Methods
 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 
Subjects

From a large population-based sample from patients with type 1 diabetes all of the antiislet autoantibody-negative, unrelated, new-onset patients (n = 28; 15 males and 13 females) were selected from 231 (92 males and 139 females; median age of onset, 17.0 yr) type 1 diabetic patients screened for antiislet autoantibodies. Their median age at onset and body mass index were 14.0 yr (range, 0.1–59.0 yr) and 18.8 kg/m2 (range, 13.1–22.8 kg/m2), respectively. They were all clinically diagnosed as having type 1 diabetes according to WHO criteria and required insulin therapy from the time of diagnosis (13). Two and 5 patients had at least 1 family member with type 1 and type 2 diabetes, respectively. Seventy-one percent (20 of 28) of these patients had DQA1*0301/DQB1*0303, DQA1*0301/DQB1*0401, or both, which are the high risk human leukocyte antigen (HLA)-DQ haplotypes for type 1 diabetes in Japanese populations (14). Sera were obtained from patients within 2 weeks after beginning insulin treatment.

An additional 54 patients with type 1A diabetes (23 males and 31 females) and 64 healthy control subjects (35 males and 29 females) were screened for those mutations that were found in autoantibody-negative patients with type 1 diabetes. The median age at onset in patients with type 1A diabetes was 19.5 yr (range, 3.0–59.0 yr), and 83% (45 of 54) were positive for GAD autoantibody, 52% (28 of 54) were positive for ICA512/IA-2 autoantibody, and 41% (22 of 54) were positive for phogrin (phosphatase homolog of granules of insulinoma)/IA-2ß autoantibody, respectively. All subjects gave informed consent, and the protocol was approved by the institutional review boards of the Nagasaki University School of Medicine. Sera were stored at -20 C until use.

Mutation analysis

The 10 exons, flanking introns, and the minimal promoter (the 354 bp upstream from the start codon) of the HNF-1{alpha} gene were amplified by PCR using genomic DNA obtained from peripheral blood and sequence-specific primers (15). PCR was performed in a 100-µL volume containing 10 mmol/L Tris-HCl (pH 8.3), 50 mmol/L KCl, 1 mmol/L MgCl2, 200 µmol/L deoxy-NTPs, 1 µmol/L of each primer, 0.25 U AmpliTaq Taq polymerase (Perkin-Elmer Corp., Foster City, CA), and 50 ng DNA. The cycling conditions were 1 min at 94 C, followed by 35 cycles consisting of 1 min at 94 C, 1 min at 60 C, and 1 min at 72 C. The PCR products were purified using a Microcon-100 (Amicon, Inc., Beverly, MA) before both strands were sequenced using a BigDye Terminator Cycle Sequencing Ready Reaction Kit (Perkin-Elmer Corp. PE Applied Biosystems). The reactions were analyzed on an ABI Prism 377 DNA Sequencer. The sequence of each mutation was confirmed by cloning the PCR product into pGEM-T vector (Promega Corp., Madison, WI) and sequencing clones representing both alleles. In the screening for specific mutations in MODY family members, patients with immune-mediated type 1 diabetes, and healthy control subjects, the nucleotide substitution of GC to AA in the promoter region was determined by PCR restriction fragment length polymorphism with the restriction enzyme Fnu4HI. The Pro379fsdelCT mutation was detected by a rapid screening technique using fluorescently labeled forward primer (5'-TCCCCTCGTAGGTCTCACGCAG-3') and modified reverse primer (5'-GTTTCCAGGAAGTGAGGCCATCATG), generating a 137-bp fragment in nonmutated samples and a 135-bp fragment from mutation alleles (16). The PCR products were analyzed on a 4% polyacrylamide denaturing gel on an ABI Prism 377 DNA Sequencer, and the difference in length between normal and mutant alleles was detected by Genescan Analysis software (ABI Perkin-Elmer Corp.).

Autoantibody assays

Autoantibodies to GAD were analyzed using RIA kits with 125I-labeled native GAD purified from pig brain (RIP anti-GAD Hoechst, Hoechst-Behring, Tokyo, Japan) as previously described (17). The insulin autoantibody assay was performed using a fluid phase radioassay with competition with cold insulin and precipitation with polyethylene glycol as previously described with some modifications (17). Autoantibodies to protein tyrosine phosphatase-like proteins, ICA512/IA-2 and phogrin/IA-2ß, were analyzed by radioassay using in vitro translated 35S-labeled ICA512bdc (amino acids 256–979 of IA-2) and the cytoplasmic domain of phogrin (amino acids 640-1015), respectively (18). The cut-off value was 5 U/mL for GAD autoantibodies, 80 µU/mL for insulin autoantibody assay, index 0.023 for ICA512/IA-2 autoantibodies, and index 0.031 for phogrin/IA-2ß autoantibodies, respectively. We participated in the international autoantibody proficiency programs for autoantibodies to GAD, insulin, and ICA512/IA-2 using these assays, and laboratory sensitivity and specificity for each assay were 100% and 100%, respectively.

Preparation of DNA constructs and functional study of the mutant HNF-1{alpha} gene

A human HNF-1{alpha} complementary DNA (cDNA) clone including the entire coding region in expression vector that has the cytomegalovirus promoter was provided by Dr. Y. Yamada (Kyoto University School of Medicine, Kyoto, Japan). The Pro379fsdelCT mutation was introduced by the Sculptor in vitro mutagenesis kit (Amersham International, Aylesbury, UK). Three kilobases of human albumin (ALB) gene promoter containing the HNF-1{alpha}-binding site (-1773 to -1789, -358 to -342, and -65 to -49 relative to the cap site) originally inserted in pBR-CAT vector (19) were subcloned into the HnidIII site of the pGL3-Basic vector (Promega Corp.). Ninety-two base pairs of the HNF-1{alpha} gene promoter (+11 to +102 relative to the transcriptional start site), which includes the wild-type (WT) and mutant activating protein-1 (AP-1)-binding site, were amplified by PCR using genomic DNA from the proband in family B and subcloned into a pGL3-Basic reporter vector (Promega Corp.). The sequences of the constructs were confirmed on an ABI Prism 377 DNA Sequencer.

HeLa cells were transfected with the indicated amounts of expression and reporter vectors together with 50 ng pRL-simian virus 40 (SV40) vector (Promega Corp.) as an internal control using SuperFect transfection reagent (QIAGEN, Tokyo, Japan). The trans-activation activities of WT-HNF-1{alpha} and Pro379fsdelCT-HNF-1{alpha} were measured after 48 h using the Dual Luciferase Reporter Assay System (Promega Corp.) and TD-20/20 Luminometer (Turner Designs, Sunnyvale, CA). To analyze the effect of the AP-1-binding site mutation +45/46 GC to AA, MIN6 cells and HuH7 cells were transfected with 2 µg WT or mutant HNF-1{alpha} promoter-pGL3, and the trans-activation activities were measured after 48 h. Each study was repeated three or four times.

Statistical analysis

Results are expressed as the mean ± SD unless otherwise indicated. Data in a luciferase reporter assay were analyzed by unpaired t test. P < 0.05 was considered statistically significant.


    Results
 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 
Identification of HNF-1{alpha} gene mutations in patients with type 1 idiopathic diabetes

Mutations were identified in 2 (7.1%) of 28 unrelated patients with type 1 diabetes who lacked antiislet autoantibodies at disease onset by sequencing of the 10 exons, flanking introns, and the minimal promoter of the HNF-1{alpha} gene. The deletion of CT at codon 379 for Pro (CCT) in exon 6 (Pro379fsdelCT) that would be expected to generate a truncated protein of 416 amino acids was identified in 1 family. A novel 2-bp substitution at nucleotide +45 (G to A) and nucleotide +46 (C to A) from the transcriptional start site, which is located in an AP-1-binding site of the promoter region and is conserved in the sequences of human, rat, mouse, and chicken HNF-1{alpha} (15, 20), was identified in another family. Both mutations were identified in heterozygous form and were not identified in 64 unrelated healthy control subjects (128 chromosomes) and 54 unrelated patients with type 1A diabetes (108 chromosomes).

Clinical profiles of subjects with mutations and their family members

The diabetic proband with frameshift mutation Pro379fsdelCT was a 27-yr-old woman who had a body mass index of 20.5 kg/m2. Her diabetes was initially noticed by urine glucose screening at school at 12 yr of age and was diagnosed by a subsequent oral glucose tolerance test (OGTT). The low insulin secretory responses to glucose [fasting immunoreactive insulin (IRI), 30.1 pmol/L; 30 min IRI, 74.2 pmol/L) and arginine (fasting IRI, 22.8 pmol/L; 30 min IRI, 67.8 pmol/L) were observed at the onset of the disease. Insulin treatment was started 5 months after diagnosis. Thus, she was initially diagnosed as a slow-onset patient with type 1 diabetes. The amount of exogenous insulin required was rapidly increased to 0.98–1.25 U/kg·day at 15 yr of age. She is a homozygote of HLA-DQA1*0301/DQB1*0401, which is one of the highest risk haplotypes of type 1 diabetes in Japanese population. She has severe diabetic retinopathy, with vitreous hemorrhage and neovascular glaucoma and diabetic neuropathy. The Pro379fsdelCT mutation was also identified in her brother, father, and two paternal cousins from whom the genomic DNA was able to be obtained (Fig. 1Go, family A). The proband, two aunts, and two cousins examined had overt diabetes, and the father had impaired glucose tolerance as measured during an OGTT. The brother showed normal glucose tolerance with impaired insulin secretory response (fasting IRI, 13.4 pmol/L; 30 min IRI, 106.9 pmol/L) at the time of examination. None of the examined subjects carrying the mutation had autoantibodies to GAD, ICA512/IA-2, or phogrin/IA-2ß.



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Figure 1. Families with mutations in the HNF-1{alpha} gene. Patients with diabetes are indicated by closed symbols, nondiabetic subjects are indicated by open symbols, and undiagnosed subjects are indicated by gray symbols. Subjects with impaired glucose tolerance are indicated by half-filled symbols. Arrows indicate the proband from each pedigree who was examined for mutations. The HNF-1{alpha} genotype, if known, is indicated below the symbol (N, normal; M, mutant). The age at diagnosis (age of examination) or age at performance of an OGTT is indicated as well.

 
The patient with a novel 2-bp substitution at nucleotides +45 (G to A) and +46 (C to A) of the promoter region was a 16-yr-old girl with a body mass index of 19.4 kg/m2. She developed acute hyperglycemia (34.6 mmol/L) at 16 yr of age with severe symptoms, including thirst, polydipsia, and polyuria. A low insulin secretory response to glucose (fasting IRI, 12.0 pmol/L; 30 min IRI, 18.0 pmol/L) was observed at the onset of the disease. She is a homozygote for HLA-DQA1*0301/DQB1*0401. No diabetic complications were observed. The same mutation was found in her mother and her sister, but not in her father or a brother. The mother showed impaired glucose tolerance as measured by an OGTT, but the sister, a 14-yr-old girl, had normal glucose tolerance (Fig. 1Go, family B).

DNA polymorphisms in the HNF-1{alpha} gene

In addition to the diabetes-associated mutations described above, we found 11 nucleotide substitutions, of which 4 were located in exons and 7 in introns (Table 1Go). All of these have been described previously and were not associated with MODY (8, 21). Seven polymorphisms, including Ala98->Val, Gly288, GGG->GGC, Thr515, ACG->ACA, and Gly574, GGC->AGC; intron 1 nucleotide -91, A->G, intron 5 nucleotide -47, C->T, and intron 9 nucleotide +44, C->T, which have been reported in whites and African-Americans (8, 21, 22), were not found in our Japanese subjects.


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Table 1. DNA polymorphisms in HNF-1{alpha} gene in 28 patients with type 1B diabetes

 
Functional properties of the mutant HNF-1{alpha} gene

To analyze the functional properties of the Pro379fsdelCT mutant HNF-1{alpha}, a luciferase reporter assay was performed using human cervical carcinoma HeLa cells, which do not have endogenous HNF-1{alpha} (23). HeLa cells were transfected with constructs encoding WT-HNF-1{alpha} and Pro379fsdelCT-HNF-1{alpha} together with the human ALB promoter-luciferase reporter gene. The mutant HNF-1{alpha} did not stimulate transcription of the ALB-luciferase reporter, whereas WT-HNF-1{alpha} stimulated transcription and generated a significant increase in reporter gene activity (Fig. 2AGo). Increasing amounts of the Pro379fsdelCT-HNF-1{alpha} inhibited luciferase activity up to 53% of the control value in a dose-dependent manner, suggesting that Pro379fsdelCT has a dominant negative effect on HNF-1{alpha} activity (Fig. 2BGo).



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Figure 2. Functional properties of Pro379fsdelCT mutant and +46/46 GC to AA mutant promoter. A, Trans-activation activity of ALB promoter in HeLa cells. Ten to 100 ng WT or Pro379fsdelCT-HNF-1{alpha} expression vector were transfected with 2 µg ALB-reporter gene and 10 ng pRL-SV40 DNA. {circ}, WT-HNF-1{alpha}; •, Pro379fsdelCT-HNF-1{alpha}. B, Fifty nanograms of WT-HNF-1{alpha} plasmid were transfected with increasing amounts (50, 200, 500, and 1000 ng) of the Pro379fsdelCT-HNF-1{alpha} expression vector. The total amount of DNA added was adjusted by empty vector. C, Promoter activity assay of WT and +45/46 GC to AA mutant promoter in MIN6 cells and HuH7 cells. Two micrograms of WT or mutant promoter reporter gene were transfected with 50 ng pRL-SV40. Luciferase activity was normalized by the activity of pRL-SV40. Each experiment was repeated three or four times, and a representative result is shown. The mean ± SD are shown. *, P < 0.05; **, P < 0.01.

 
The effect of the AP-1-binding site mutation +45/46 GC to AA was also analyzed using mouse insulinoma MIN6 cells and human hepatoma HuH7 cells. The promoter activity of the +45/46 GC to AA construct was decreased by 20% and 12% compared to that of a WT-promoter construct in a MIN6 and a HuH7 cell, respectively (Fig. 2CGo).


    Discussion
 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 
Although the underlying molecular mechanisms for the development of type 1 diabetes have not been fully clarified, the most common form of type 1 diabetes is believed to be an autoimmune disorder caused by the T cell-mediated selective destruction of pancreatic ß-cells that leads to an absolute insulin deficiency. At present, the best tool for identifying the autoimmune process of pancreatic ß-cells is the detection of autoantibodies to biochemically defined islet autoantigens, including insulin, GAD, and the protein tyrosine phosphatase-like molecules, ICA512/IA-2 and phogrin/IA-2ß (24, 25). With combinatorial antiislet autoantibody determination, greater than 90% of Japanese new-onset patients with type 1 diabetes express one or more of these three autoantibodies (insulin, GAD, and IA-2/phogrin), whereas about 10% of patients are negative for all of these autoantibodies and are classified as type 1B diabetics (17). MODY3 caused by the mutations in the HNF-1{alpha} gene is characterized by rapid progress to overt diabetes in childhood or adolescence and severe insulin secretory defects in response to glucose (12, 26, 27). We report here identification of the mutations in the HNF-1{alpha} gene in 2 of 28 antiislet autoantibody-negative patients with type 1 diabetes, indicating that some of the MODY3 patients treated with insulin would be misclassified as having type 1 diabetes. The results highlight the difficulties in distinguishing between insulin-dependent diabetic patients with MODY3 and patients with type 1B diabetes because of the lack of antiislet autoantibodies in these patients (12, 28, 29).

The frameshift mutation Pro379fsdelCT identified in exon 6 of the HNF-1{alpha} gene would generate a mutant truncated protein of 416 amino acids, which affects the COOH-terminal trans-activation domain of HNF-1{alpha} (30). The functional studies indicate that this frameshift mutation has no trans-activation activity and acts in a dominant negative manner. Sourdive and co-workers reported that loss of residues 416–474 of HNF-1{alpha} not only impaired trans-activation but also abolished nuclear transportation of the HNF-1{alpha} protein (31), suggesting that this mutant is also lacking in proper nuclear targeting signals. The mutation was present in five subjects; three were diabetic, one had impaired glucose tolerance, and one had normal glucose tolerance. The father in this family carried the mutation, although he was nondiabetic at the age of 66 yr, indicating incomplete penetrance.

The novel mutation in the promoter region (GC->AA) at nucleotides +45 and +46 from the transcriptional start was found in the other nuclear family. This mutation disrupts the binding site for the AP-1, which has been shown to be important in activating the transcription factor HNF-4{alpha} gene (32). The functional studies using MIN6 cells and HuH7 cells suggest that the +45/46 GC to AA mutation could lead to reduced promoter activity of HNF-1{alpha} gene and thus might lead to lower than normal levels of HNF-1{alpha} protein expression and consequently decreased transcription of target genes encoding proteins that play a key role in the insulin secretory response to glucose.

Moller and co-workers recently reported that in Danish patients with type 1 diabetes without one of the high risk HLA haplotypes, DR3 or DR4, about 10% of the patients carried a mutation in the HNF-1{alpha} gene (29). However, both patients with type 1B diabetes carrying the HNF-1{alpha} mutation reported here had HLA-DQA1*0301/DQB1*0401, a haplotype that is a high risk HLA haplotype in Japanese subjects for type 1 diabetes (14). Therefore, to avoid the misclassification of MODY3 patients as type 1 diabetics, in whom an absolute deficiency of insulin secretion is due to pancreatic ß-cell destruction, clinically type 1 diabetic patients without antiislet autoantibodies should be examined for mutations in the HNF-1{alpha} gene even if they have high risk HLA haplotypes for type 1 diabetes.


    Acknowledgments
 
We are grateful to Dr. G. S. Eisenbarth (Barbara Davis Center for Childhood Diabetes, Denver, CO) for providing the cDNA for human ICA512/IA-2 and phogrin, and to Dr. F. Nishibe (Yamasa Corp., Tokyo, Japan) and K. Ohgushi for their excellent technical assistance. We also thank Dr. Y. Goto and Y. Maeda for their contribution to this work, and Dr. Y. Yamada (Kyoto University, Kyoto, Japan) for providing the cDNA for human HNF-1{alpha}.

Received July 14, 1999.

Revised September 15, 1999.

Accepted September 23, 1999.


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 Top
 Abstract
 Introduction
 Subjects and Methods
 Results
 Discussion
 References
 

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