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The Journal of Clinical Endocrinology & Metabolism Vol. 82, No. 6 1934-1938
Copyright © 1997 by The Endocrine Society


Experimental Studies

A 5'-Splice Site Mutation in the Cytochrome P450 Steroid 17{alpha}-Hydroxylase Gene in 17{alpha}-Hydroxylase Deficiency

Hideki Yamaguchi, Masamitsu Nakazato, Mikiya Miyazato, Kenji Kangawa and Shigeru Matsukura

Third Department of Internal Medicine, Miyazaki Medical College (H.Y., M.N., M.M., S.M.), Kiyotake, Miyazaki 889–16; and the National Cardiovascular Center Research Institute (M.M., K.K.), Suita, Osaka 565, Japan

Address all correspondence and requests for reprints to: Masamitsu Nakazato, M.D., Ph.D., Third Department of Internal Medicine, Miyazaki Medical College, 5200 Kihara, Kiyotake, Miyazaki 889–16, Japan. E-mail: nakazato{at}post.miyazaki-med.ac.jp


    Abstract
 Top
 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 
17{alpha}-Hydroxylase deficiency (17OHD) is an autosomal recessive disorder that produces an excess of mineralocorticoids and sexual differentiation abnormalities. Using DNA sequencing analysis of the 17{alpha}-hydroxylase (CYP17) gene from a Japanese patient with 17OHD, we identified a new type of genetic abnormality in this disease, a G to A transition at position +5 in the splice donor site of intron 7 of the CYP17 gene. In vitro expression analysis of an allelic minigene that consists of exons 6–8 of the patient’s CYP17 gene showed that the transition causes the skipping of exon 7. This exon skipping alters the translational reading frame of exon 8 and introduces a premature stop codon (TAA) at amino acid position 410 proximal to the heme iron-binding site essential for the enzymatic activity of CYP17. Restriction enzyme analysis showed that the patient is homozygous for the mutated CYP17 gene, and the parents are heterozygotes. This is the first reported patient with 17OHD caused by the splice site mutation in the CYP17 gene.


    Introduction
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 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 
MICROSOMAL cytochrome P450 steroid 17{alpha}-hydroxylase (P450c17) is an important component of the steroidogenic synthesis pathway that leads to the production of 17{alpha}-hydroxysteroids and adrenal and gonadal sex steroids. The human 17{alpha}-hydroxylase (CYP17) gene, a single copy gene located on chromosome 10q24.3 (1, 2), consists of 8 exons that span 6569 bases and encode a protein of 508 amino acids (3). This gene is expressed in the adrenal cortex and gonads (4). P450c17 catalyzes both the 17{alpha}-hydroxylation of pregnenolone or progesterone and the 17,20-lyase reaction of 17{alpha}-hydroxylated pregnenolone to produce the C19 steroid precursors of androgens and estrogens.

17{alpha}-Hydroxylase deficiency (17OHD), an autosomal recessive disorder, is relatively rare; 130 patients have been reported (Refs. 5–8 and references therein). Genetic abnormalities in the CYP17 gene affect both adrenal and gonadal steroidogenesis. Impaired production of cortisol and sex steroids induces the elevation of plasma ACTH and the overproduction of mineralocorticoids, resulting in hypertension, hypokalemia, and bilateral adrenal hyperplasia. In addition, the impaired production of sex steroids leads to abnormal sexual development.

To date, 20 deleterious mutations have been reported in this disorder (5, 6, 7, 8). These mutations occur in 7 exons of the gene, excluding exon 7, and consist of missense and nonsense mutations as well as small insertions or deletions that alter the reading frame of the gene.

In the transcription step in eukaryotic genes, they first produce premessenger ribonucleic acids (pre-mRNAs) that carry intervening noncoding sequences (introns), then the introns are removed by splicing before the mRNA is transported to the ribosomes where it is translated to protein. The splicing process requires consensus nucleotide sequences at the 5'- and 3'-splice sites of the pre-mRNAs. Mutations at the splice junction sequences cause human genetic diseases by altering the accuracy of mRNA splicing (9). We here report a new type of CYP17 gene mutation, a G to A transition at position +5 in the splice donor site of intron 7, in a Japanese patient with 17OHD.


    Subject and Methods
 Top
 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 
Patient

The patient, a 32-yr-old Japanese phenotypic woman, has been reported in detail by Yazaki et al. (10). In summary, her clinical manifestations were generalized muscle weakness due to hypokalemic myopathy, primary amenorrhea, and lack of pubertal development. Laparoscopy showed intraabdominal testes and no uterus. Her karyotype was 46,XY. She is the offspring of a first cousin marriage. Her parents showed hypertension, but no abnormalities in sexual development. Basal plasma hormone levels are summarized in Table 1Go. Glucocorticoid replacement therapy normalized the plasma levels of ACTH, 17-deoxysteroids, and potassium.


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Table 1.

 
CYP17 gene analysis

Genomic DNA was extracted from the patient’s peripheral blood leukocytes. Eight exons of the CYP17 gene, including the exon-intron boundaries, were amplified by PCR with a GeneAmp PCR reagent kit (Perkin-Elmer/Cetus, Norwalk, CT). The oligonucleotide primers and PCR conditions were described by Monno et al. (11). The PCR products were ligated with pT7Blue T-Vector (Novagen, Madison, WI), then transformed into Escherichia coli XL1-Blue supercompetent cells (Stratagene, La Jolla, CA). Ten colonies were selected and cultured, then purified with Qiagen resin (Qiagen, Chatsworth, CA). The plasmid DNA was sequenced in an ABI 373A automated sequencer (Applied Biosystems, Foster City, CA).

Determination of zygosity

A 215-bp fragment of the CYP17 gene that included a G to A transition at position +5 in the splice donor site of intron 7 was amplified with a subcloning primer set (Fig. 2AGo). PCR conditions were a hot start with 0.5 U AmpliTaq, followed by 30 cycles of denaturation at 94 C for 50 s, annealing at 62 C for 50 s, and extension at 72 C for 100 s. The PCR product was digested at 37 C for 2 h with 2.5 U of the restriction enzyme TfiI (New England Biolabs, Beverly, MA), then electrophoresed on a 3% agarose gel (NuSieve GTG Agarose, TaKaRa Shuzou Co., Shiga, Japan).



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Figure 2. A, Restriction enzyme analysis of the PCR product of exon 7-intron 7 by TfiI digestion. The 215-bp product from the mutant CYP17 gene with a G to A transition at position +5 in intron 7 is cut into two fragments of 134 and 81 bp because the transition creates a TfiI restriction site. The wild-type CYP17 gene is undigested. B, Electrophoretic patterns of the PCR products from the mutant and wild-type CYP17 genes on TfiI digestion. The patient had 134- and 81-bp fragments, whereas both parents had the normal 215-bp fragment as well as the abnormal 134- and 81-bp fragments. The normal subject had only the 215-bp fragment. Base pair sizes of the PCR products are indicated at the right. •, Patient; {circ}, unaffected; and , carriers; =, consanguineous marriage; NE, not examined.

 
In vitro expression study

Exons 6–8 of the patient’s mutant CYP17 gene and those of the normal CYP17 gene from a control subject were amplified using the Expand Long Template PCR System (Boehringer Mannheim Biochemica, Philadelphia, PA). The respective PCR products, consisting of 2057 bp, were ligated to EcoRI/NotI adaptors and size-fractionated in a Sepharose CL-4B column (Pharmacia Biotech, Piscataway, NJ). The resulting products were ligated to pBluescript vector and cloned. Ligation of the products to the EcoRI/NotI adaptors was confirmed by direct DNA sequencing. The inserts were cleaved from the plasmid DNA with the restriction enzyme NotI (Toyobo Biochemicals, Osaka, Japan), then ligated to the expression vector pcDNAI/Amp (Invitrogen, San Diego, CA; Fig. 3Go). The chimeric plasmids were cloned, then purified with Qiagen resin. Two micrograms of the mutant or normal chimeric plasmid were transfected into COS-7 cells by the lipofectamine method. The transfected cells were plated in six-well plastic culture dishes and incubated at 37 C for 6 h in serum- and antibiotic-free DMEM. The medium then was changed to one containing 10% FCS and antibiotics (100 IU/mL penicillin and 100 µg/mL streptomycin) and again changed 24 h later. After 48 h, the transfected cells were washed once with phosphate-buffered saline, then digested with trypsin and collected. mRNA was extracted from the cells with a Micro-FastTrack mRNA Isolation Kit (Invitrogen). The first strand complementary DNA (cDNA) was synthesized with 25 ng mRNA sample, 110 U ribonuclease inhibitor, 6 µmol/L MgCl2, deoxy-NTP mixture (8 mmol/L each), 1 x PCR buffer (GeneAmp PCR Reagent Kit, Perkin-Elmer/Cetus), 7.5 µmol/L oligo(deoxythymdine)18 primer, and 200 U Superscript RT ribonuclease H- reverse transcriptase (Life Technologies, Gaithersburg, MD). Reverse transcription was performed at 42 C for 30 min, after which the mixture was incubated at 94 C for 3 min to inactivate the reverse transcriptase. The resulting cDNA was subjected to PCR amplification with 2 µmol/L primers (sense: 5'-AAGCTCTACGAGGAGATTGACC-3', 6430–6451 bp; antisense: 5'-TGTGTTGTGGGGCCACATAG-3', 8422–8441 bp) and 2.5 U Taq DNA polymerase (Fig. 3Go). PCR conditions were 32 cycles of denaturation at 94 C for 30 s, annealing at 55 C for 30 s, and extension at 72 C for 1 min. PCR products of 420–612 bp were excised from the 2% agarose gel (FMC BioProducts, Rockland, ME) and purified with Qiagen resin. Portions of the purified PCR products were further amplified with an inner oligonucleotide primer set (sense: 5'-CTATCAGTGACCGTAACCGTCT-3', 6479–6500 bp; antisense: 5'-CAGGATCTCACCTATACAGGAG-3', 8186–8207 bp; Fig. 3Go). The products of this nested PCR were electrophoresed on a 2% agarose gel, purified with Qiagen resin, then sequenced in an ABI 373A automated sequencer.



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Figure 3. Scheme of the mini-CYP17 gene expression vector construct. Exons are represented by boxes; introns are indicated by solid lines. The genomic fragments from exons 6–8 of the mutant and wild-type CYP17 genes are ligated with NotI sites of expression vector pcDNAI/Amp. Bars below exons 6 and 8 denote the positions of the primers used in PCR.

 

    Results
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 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 
CYP17 gene sequence analysis

The entire coding region of the patient’s CYP17 gene, including the exon-intron boundaries, was sequenced. The patient had a G to A transition at position +5 in the splice donor site of intron 7 (Fig. 1Go). All 10 clones of exon 7 examined here had this mutation. No base changes were found in the 8 exons or other exon-intron boundaries.



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Figure 1. Nucleotide sequences of the exon 7-intron 7 boundary of the wild-type (upper panel) and patient’s (lower panel) CYP17 genes. Raw data in the electrograms: – – –, G; - – - , T; - - -, A; and —-, C. Sequences are indicated by capitals in the exon and by small letters in the intron. A single base change from G to A at position +5 in intron 7 is present in the patient’s gene.

 
Determination of zygosity

The PCR product from the mutant allele with a G to A transition at +5 position in intron 7 was cut into 134- and 81-bp fragments by TfiI digestion, but wild-type allele was undigested (Fig. 2AGo). The patient gave only 134- and 81-bp fragments on TfiI digestion (Fig. 2BGo), indicative that she was homozygous for the mutated CYP17 gene. Both of her healthy parents had the normal 215-bp fragment in addition to the abnormal 134- and 81-bp fragments, indicating that they were heterozygous carriers. Fifty normal subjects had only the 215-bp fragment.

Expression of the CYP17 minigene in COS-7 cells

The patient’s CYP17 mRNA needed to be analyzed to determine whether the G to A transition causes abnormal transcription of the CYP17 gene, but this was impossible because the CYP17 gene is expressed only in the adrenal gland of the patient whose intraabdominal testes had already been extirpated. We, therefore, made an in vitro expression study using the chimeric minigene system to analyze the transcription of the patient’s CYP17 gene. We first constructed two chimeric minigenes that consisted of an expression vector pcDNAI/Amp and the mutant or wild-type CYP17 gene, which spans exons 6–8 (Fig. 3Go). After the respective minigenes were expressed in COS-7 cells, the splice site selection patterns for exons 6–8 were assessed from the cDNA sizes that corresponded to the expressed mRNAs. The mRNA first was subjected to the reverse transcription-PCR (RT-PCR), then to nested PCR because there was too little RT-PCR product to analyze by electrophoresis. The nested PCR product of the chimeric minigene that included the wild-type CYP17 gene was 314 bp (Fig. 4AGo) as expected. The transcript of the mutant-type minigene was 210 bp, 104 bp shorter than that of the wild-type product. The deletion corresponded to exon 7 with a size of 104 bp. We confirmed these two 314- and 210-bp products by DNA sequencing analyses. The former consisted of exons 6, 7, and 8, whereas the latter consisted only of exons 6 and 8 (Fig. 4BGo). This exon skipping altered the reading frame of exon 8, resulting in a premature stop codon (TAA) 90 bp downstream from the exon 6–8 boundary (codon 380; Fig. 4CGo).



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Figure 4. A, Electrophoretic patterns of the nested RT-PCR transcript of the mutant and wild-type mini-CYP17 genes. Base pair sizes of the PCR products are indicated at the right. B, Sequence analysis of the nested RT-PCR transcript from the patient’s mini-CYP17 gene. Raw data in the electrograms: —-, G; - - -, T; - – -, A; and – – –, C. The sequencing data show that exon 6 is followed by exon 8 because of the deletion of exon 7. Arrows show the exon boundaries. The nucleotide sequences of exon 8 are shown by letters in bold italics. The reading frame shift in exon 8 created a premature stop codon (TAA) 90 bp downstream from the boundary of exons 6–8. C, Scheme of mRNA splicing of the wild-type and mutant mini-CYP17 genes. The G to A transition is indicated by an asterisk. The wild-type minigene yielded a 314-bp fragment that includes exon 7, whereas the mutant type yielded a 210-bp fragment lacking exon 7. The reading frame of exon 8 in the mutant gene is altered, as shown by the translated amino acids at the 5'- and 3'-positions of each exon.

 

    Discussion
 Top
 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 
We identified a new type of molecular pathogenesis in 17OHD, a splice junction mutation in the intron of the CYP17 gene. The patient lacked masculinization due to low levels of 17{alpha}-hydroxysteroids and sex steroids, hypertension due to the high plasma levels of mineralocorticoids, and bilateral adrenal hyperplasia due to oversecretion of ACTH. Twenty different mutations of the CYP17 gene have been reported to date in 17{alpha}-hydroxylase and 17,20-lyase deficiency syndromes (Refs. 5–8 and references therein). These mutations include small base pair duplications (7-bp duplication in exon 2, Ile duplication in exon 2, and 4-bp duplication in exon 8), small base pair deletions (Phe in exon 1, 2-bp deletion in exon 5, 1-bp deletion in exon 8, and Asp-Ser-Phe deletion in exon 8), 518-bp deletion with a 469-bp insertion in exons 2–3, missense mutations (Tyr64Ser, Gly90Asp, Arg96Trp, Ser106Pro, Pro342Thr, His373Leu, Arg440His, and Arg496Cys), and nonsense mutations (Trp17End, Glu194End, Arg239End, and Gln461End). Four of the patients studied had compound heterozygous mutations: Glu194End and Arg239End, Tyr64Ser and duplication of Ile in exon 2, Arg239End and Pro342Thr, and Gln461End and Arg496Cys. The others were homozygous for their individual mutations.

RNA splicing occurs on the spliceosome, a complex assembly of small nuclear ribonucleoprotein particles composed of a variety of small nuclear RNAs and associated proteins. The nucleotide sequence of pre-mRNA and its secondary structure are necessary elements for recognition of the splice donor and splice acceptor sites as well as for cleavage of the intron by the spliceosome. U1 small nuclear ribonucleoprotein particles binds directly to the 5'-splice donor site, a process mediated by base-pairing between the 5'-end of the U1 snRNA and the complementary nine nucleotides at the mRNA splice junction (12). Most introns begin with GT and end with AG in the nuclear genes of eukaryotes (GT-AG rule). The consensus DNA sequence of the 5'-splice donor site in vertebrate genes is GTAGAGT. Various mutations in the vicinity of mRNA splice junctions have been shown to cause abnormal splicing, resulting in exon skipping or, less frequently, creation of novel cryptic splice sites (9). The guanine at position +5 in the splice donor site is highly conserved in vertebrate genes (13), and the G to A transition at this position is responsible for hemophilia A, hemophilia B, ß-thalassemia, osteogenesis imperfecta II, Lesch-Nyhan syndrome, acatalassemia, protein C deficiency, and protein S deficiency (Ref. 9 and references therein). The single base change at the +5 position in these hereditary disorders causes skipping of the preceding exon, which produces a truncated protein with no biological activity. Replacement of guanine with another nucleotide at position +5 is predicted to reduce the stability of the base-pairing of the 5'-splice site with the complementary region of U1 small nuclear RNA (9).

Using an in vitro expression study with the chimeric minigene system, we verified that the G to A transition in intron 7 of the patient’s CYP17 gene caused the skipping of exon 7. This skipping altered the reading frame downstream from codon 380, which created a premature termination signal at codon 410. The codons between 435 and 455 of the CYP17 gene are well conserved in many species, in particular Cys442, the ligand of the catalytic heme iron of the cytochrome P450 enzyme, which is essential for enzyme activity (14). Three nonsense mutations (Trp17End, Glu194End, and Arg239End) and three reading frame shifts (7-bp duplication in exon 2, 2-bp deletion in exon 5, and 518-bp deletion with a 469-bp insertion in exons 2–3) produced premature stop codons proximal to Cys442. These mutations completely abolished the enzymatic activity of P450c17 in in vitro expression studies that used truncated P450c17 molecules that lack Cys442 (5). The splice junction mutation found in intron 7 in our study, therefore, is considered to be null for P450c17 activity.

Because of parent consanguinity and the known autosomal recessive inheritance of this disease, the patient’s genotype was considered to be homozygous for the mutation. This was confirmed by restriction enzyme analysis and by the heterozygosity found for her parents.

We have described a novel genetic mutation of the CYP17 gene. The knowledge gained from this study provides new insight for better understanding of the molecular pathogenesis of 17OHD.

Received October 9, 1996.

Revised March 4, 1997.

Accepted March 12, 1997.


    References
 Top
 Abstract
 Introduction
 Subject and Methods
 Results
 Discussion
 References
 

  1. Matteson KJ, Picado-Leonard J, Chung BC, Mohandas TK, Miller WL. 1986 Assignment of the gene for adrenal P450C17 (steroid 17{alpha}-hydoroxylase/17,20 lyase) to human chromosome 10. J Clin Endocrinol Metab. 63:789–791.[Abstract/Free Full Text]
  2. Fan YS, Sasi R, Lee C, Winter JS, Waterman MR, Lin CC. 1992 Localization of the human CYP17 gene (cytochrome P450 17{alpha}) to 10q24.3 by fluorescene in situ hybridization and simultaneous chromosome banding. Genomics. 14:1110–1111.[CrossRef][Medline]
  3. Picado-Leonard J, Miller WL. 1987 Cloning and sequence of the human gene for P450c17 (steroid 17{alpha}-hydoroxylase/17,20 lyase): similarity with the gene for P450C21. DNA. 6:493–498.[Medline]
  4. Chung B, Picado-Leonard J, Haniu M, et al. 1987 Cytochrome P450c17 (steroid 17{alpha}-hydroxylase/17,20-lyase): cloning of human adrenal and testis cDNAs indicates the same gene is expressed in both tissues. Proc Natl Acad Sci USA. 84:407–411.[Abstract/Free Full Text]
  5. Yanase T, Simpson ER, Waterman MR. 1991 17{alpha}-Hydroxylase/17,20-lyase deficiency: from clinical investigation to molecular definition. Endocr Rev. 12:91–107.[Abstract/Free Full Text]
  6. Yanase T. 1995 17{alpha}-Hydroxylase/17,20-lyase defects. J Steroid Biochem Mol Biol. 53:153–157.[CrossRef][Medline]
  7. Oshiro C, Takasu N, Wakugami T, et al. 1995 17{alpha}-Hydroxylase deficiency with one base pair deletion of the cytochrome P450c17 (CYP17) gene. J Clin Endocrinol Metab. 80:2526–2529.[Abstract]
  8. Laflamme N, Leblanc JF, Mailloux J, Faure N, Labrie F, Simard J. 1996 Mutation R96W in cytochrome P450c17 gene causes combined 17-hydroxylase/17–20-lyase deficiency in two French Canadian patients. J Clin Endocrinol Metab. 81:264–268.[Abstract]
  9. Krawczak M, Reiss J, Cooper DN. 1992 The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. Hum Genet. 90:41–54.[Medline]
  10. Yazaki K, Kuribayashi T, Yamamura Y, Kurihara T, Araki S. 1982 Hypokalemic myopathy associated with 17{alpha}-hydroxylase deficiency: a case report. Neurology. 32:94–97.[Abstract/Free Full Text]
  11. Monno S, Ogawa H, Date T, Fujioka M, Miller WL, Kobayashi M. 1993 Mutation of histidine-373 to leucine in cytochrome P450c17{alpha} causes 17{alpha}-hydroxylase. J Biol Chem268 :25811–25817.
  12. Krainer AR, Maniatis T. 1985 Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro. Cell. 42:725–736.[CrossRef][Medline]
  13. Padgett RA, Grabowski PJ, Konarska MM, Seiler S, Sharp PA. 1986 Splicing of messenger RNA precursors. Annu Rev Biochem. 55:1119–1150.[CrossRef][Medline]
  14. Shimizu T, Hirano K, Takahashi M, Hatano M, Fujii-Kuriyama Y. 1988 Site-directed mutagenesis of rat liver cytochrome P450{alpha}: Axial ligand and heme incorporation. Biochemistry. 27:4138–4141.[CrossRef][Medline]



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